View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19422_low_5 (Length: 274)
Name: NF19422_low_5
Description: NF19422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19422_low_5 |
 | |
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| [»] scaffold0134 (1 HSPs) |
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| [»] scaffold0129 (1 HSPs) |
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| [»] scaffold0831 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 42566016 - 42565759
Alignment:
| Q |
1 |
tggttaccattgcaagtcaatatggagaagtctatggctgccaaagtcagcaactatatacatgacgatattgcgtttgccattctgtcaaaactccctc |
100 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42566016 |
tggttaccattgcaagtcaatatggagaaatctatggctgtcaaagtcagcgacaatatacatgacgatattgcgtttgccattctgtcaaaactccctc |
42565917 |
T |
|
| Q |
101 |
tcaaatcgttgataagatttgaatgcttacgtaaatcatggtctcttttatttgacaatcctcatttcatgaccgtgtatcgcaaaaatttcttatctaa |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42565916 |
tcaaatcgttgagaagatttgaatgcttacgtaaatcatggtctcttttatttgacaatcctcatttcataaccgtgtatcgcaaaaatttcttatctaa |
42565817 |
T |
|
| Q |
201 |
atgtccctcttatgacgacgaggcatctttcctcatatatatccatggtggcaagcgg |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42565816 |
atgtccctcttatgacgacgaggcatctttcctcatatatatccatggtggcaagcgg |
42565759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 16487663 - 16487551
Alignment:
| Q |
83 |
ttctgtcaaaactccctctcaaatcgttgataagatttgaatgcttacgtaaatcatggtctcttttatttgacaatcctcatttcatgaccgtgtatcg |
182 |
Q |
| |
|
|||| |||||||| ||| ||||||| |||| || |||| |||| ||| ||||||||||| ||||||||||| || || ||||||||||| ||||||| |
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| T |
16487663 |
ttctctcaaaactacctatcaaatctttgaagaggtttggatgcgtacacaaatcatggtcgcttttatttgataacccacatttcatgactatgtatcg |
16487564 |
T |
|
| Q |
183 |
caaaaatttctta |
195 |
Q |
| |
|
||| ||| ||||| |
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|
| T |
16487563 |
caataatctctta |
16487551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 172
Target Start/End: Complemental strand, 27174457 - 27174339
Alignment:
| Q |
54 |
ctatatacatgacgatattgcgtttgccattctgtcaaaactccctctcaaatcgttgataagatttgaatgcttacgtaaatcatggtctcttttattt |
153 |
Q |
| |
|
|||||||||||| |||||| | || | | ||| |||||| | ||||| ||||| |||| |||||| |||| |||| |||||||| || ||||||||| |
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| T |
27174457 |
ctatatacatgatgatattaccttctcaaatctatcaaaattacctctgaaatctttgaagcgatttggatgcgtacgcaaatcatgatcacttttattt |
27174358 |
T |
|
| Q |
154 |
gacaatcctcatttcatga |
172 |
Q |
| |
|
|| ||||||| |||||||| |
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| T |
27174357 |
gaaaatcctcttttcatga |
27174339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 42841509 - 42841431
Alignment:
| Q |
117 |
atttgaatgcttacgtaaatcatggtctcttttatttgacaatcctcatttcatgaccgtgtatcgcaaaaatttctta |
195 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| |||||||| |||| | |||| ||||| |||| ||||| |||||||| |
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|
| T |
42841509 |
atttgaatgcgtacataaatcatggtctctattatttgataatcatgattttatgactatgtaccgcaactatttctta |
42841431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 42782321 - 42782377
Alignment:
| Q |
116 |
gatttgaatgcttacgtaaatcatggtctcttttatttgacaatcctcatttcatga |
172 |
Q |
| |
|
|||||| |||| |||||||||||||||| ||| ||||||| |||||| |||||||| |
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|
| T |
42782321 |
gatttggatgcgtacgtaaatcatggtcacttctatttgaaaatccttttttcatga |
42782377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 51 - 197
Target Start/End: Complemental strand, 32745848 - 32745702
Alignment:
| Q |
51 |
caactatatacatgacgatattgcgtttgccattctgtcaaaactccctctcaaatcgttgataagatttgaatgcttacgtaaatcatggtctctttta |
150 |
Q |
| |
|
||||||||||| ||| |||||||| || |||| || |||||||| ||||| ||||| || | | ||||||||||| | || |||||||||||||| ||| |
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| T |
32745848 |
caactatatacctgatgatattgccttctccatcctatcaaaactacctcttaaatcttttaaacgatttgaatgcgttcgcaaatcatggtctctctta |
32745749 |
T |
|
| Q |
151 |
tttgacaatcctcatttcatgaccgtgtatcgcaaaaatttcttatc |
197 |
Q |
| |
|
| ||| ||| |||||||||||| | ||| |||||| ||||||||||| |
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|
| T |
32745748 |
tctgaaaatactcatttcatgaacatgtttcgcaacaatttcttatc |
32745702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 200
Target Start/End: Complemental strand, 23216915 - 23216812
Alignment:
| Q |
97 |
cctctcaaatcgttgataagatttgaatgcttacgtaaatcatggtctcttttatttgacaatcctcatttcatgaccgtgtatcgcaaaaatttcttat |
196 |
Q |
| |
|
||||| ||||| |||| ||||||||||| | || |||||||||||||| ||| |||| ||| |||||||||||| | ||| |||||| || ||||||| |
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| T |
23216915 |
cctcttaaatctttgaagagatttgaatgtgttcgcaaatcatggtctctcttaattgataattctcatttcatgaacatgtttcgcaataacttcttat |
23216816 |
T |
|
| Q |
197 |
ctaa |
200 |
Q |
| |
|
|||| |
|
|
| T |
23216815 |
ctaa |
23216812 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 200
Target Start/End: Original strand, 29144357 - 29144505
Alignment:
| Q |
52 |
aactatatacatgacgatattgcgtttgccattctgtcaaaactccctctcaaatcgttgataagatttgaatgcttacgtaaatcatggtctcttttat |
151 |
Q |
| |
|
|||||||||| || |||||||| || ||||||| || ||| | ||||| ||||| |||| |||||| |||| | |||||||| |||| ||| |||| |
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| T |
29144357 |
aactatatactcgatgatattgccttatccattctatcgaaattgcctcttaaatctttgaagcgatttggatgcgttcgtaaatcttggtatctcttat |
29144456 |
T |
|
| Q |
152 |
ttgacaatcctcatttcatgaccgtgtatcgcaaaaatttcttatctaa |
200 |
Q |
| |
|
|||| || |||||||||||| | ||| ||||| |||||||||||||| |
|
|
| T |
29144457 |
ttgaagatactcatttcatgaacatgttccgcaacaatttcttatctaa |
29144505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 15632294 - 15632184
Alignment:
| Q |
87 |
gtcaaaactccctctcaaatcgttgataagatttgaatgcttacgtaaatcatggtctcttttatttgacaatcctcatttcatgaccgtgtatcgcaaa |
186 |
Q |
| |
|
||||||||| || ||||||| |||| | |||||| |||| |||||| ||||||||||| ||||||||||| | |||||||||||| || | ||||| |
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|
| T |
15632294 |
gtcaaaacttcccatcaaatctttgaaacgatttggatgcacacgtaagtcatggtctctcttatttgacaaccatcatttcatgactatgcaccgcaat |
15632195 |
T |
|
| Q |
187 |
aatttcttatc |
197 |
Q |
| |
|
||||||||||| |
|
|
| T |
15632194 |
aatttcttatc |
15632184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 15601015 - 15600901
Alignment:
| Q |
83 |
ttctgtcaaaactccctctcaaatcgttgataagatttgaatgcttacgtaaatcatggtctcttttatttgacaatcctcatttcatgaccgtgtatcg |
182 |
Q |
| |
|
||||||||||||| || |||||| |||| | |||||| |||| |||||| ||||||||||| |||||| |||| | |||||||||||| || | || |
|
|
| T |
15601015 |
ttctgtcaaaacttcccatcaaatttttgaaacgatttggatgcgcacgtaagtcatggtctctcttatttcacaaccatcatttcatgactatgcaccg |
15600916 |
T |
|
| Q |
183 |
caaaaatttcttatc |
197 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
15600915 |
caataatttcttatc |
15600901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 200
Target Start/End: Complemental strand, 17214 - 17094
Alignment:
| Q |
80 |
ccattctgtcaaaactccctctcaaatcgttgataagatttgaatgcttacgtaaatcatggtctcttttatttgacaatcctcatttcatgaccgtgta |
179 |
Q |
| |
|
||||||| ||||| | ||||| ||||| |||| |||||||||||| | | |||||||||||||| ||| |||| ||| || ||||||||| | || |
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|
| T |
17214 |
ccattctatcaaagttgcctcttaaatctttgaagagatttgaatgcgtttgcaaatcatggtctctcttaattgataattcttatttcatgaacaagtt |
17115 |
T |
|
| Q |
180 |
tcgcaaaaatttcttatctaa |
200 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
17114 |
tcgcaataatttcttatctaa |
17094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 20425736 - 20425826
Alignment:
| Q |
82 |
attctgtcaaaactccctctcaaatcgttgataagatttgaatgcttacgtaaatcatggtctcttttatttgacaatcctcatttcatga |
172 |
Q |
| |
|
|||||||||||||| ||| | ||||| |||| | ||||||||||| || | || ||||||||||||||||||| | |||||||||||| |
|
|
| T |
20425736 |
attctgtcaaaacttcctttaaaatctttgaaacgatttgaatgcgtatgcaatgcatggtctcttttatttgaagactctcatttcatga |
20425826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 34427 - 34358
Alignment:
| Q |
128 |
tacgtaaatcatggtctcttttatttgacaatcctcatttcatgaccgtgtatcgcaaaaatttcttatc |
197 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| ||||||| | | |||| |||||| ||||| |||| |
|
|
| T |
34427 |
tacgtaaatcatggtctcacttatttgagaatcctaatttcataaacatgtaccgcaaatatttcatatc |
34358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 16920121 - 16920190
Alignment:
| Q |
116 |
gatttgaatgcttacgtaaatcatggtctcttttatttgacaatcctcatttcatgaccgtgtatcgcaa |
185 |
Q |
| |
|
|||||| |||| |||||||||||||| | |||| ||||| || | ||||||||||||| |||||||||| |
|
|
| T |
16920121 |
gatttggatgcgtacgtaaatcatgggcctttttgtttgaaaaccttcatttcatgaccatgtatcgcaa |
16920190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0831
Description:
Target: scaffold0831; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 2163 - 2127
Alignment:
| Q |
136 |
tcatggtctcttttatttgacaatcctcatttcatga |
172 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2163 |
tcatggtctcttttatttgaagatcctcatttcatga |
2127 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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