View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19423_low_1 (Length: 445)

Name: NF19423_low_1
Description: NF19423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19423_low_1
NF19423_low_1
[»] chr5 (10 HSPs)
chr5 (139-292)||(30724233-30724386)
chr5 (139-292)||(30691264-30691417)
chr5 (139-292)||(18475665-18475818)
chr5 (351-439)||(21708550-21708638)
chr5 (140-292)||(23912581-23912737)
chr5 (50-110)||(30691211-30691271)
chr5 (50-110)||(30724180-30724240)
chr5 (151-292)||(29331670-29331815)
chr5 (50-119)||(18475802-18475873)
chr5 (50-119)||(29331811-29331880)
[»] chr4 (16 HSPs)
chr4 (139-292)||(27409298-27409451)
chr4 (139-292)||(18462315-18462469)
chr4 (151-292)||(10255652-10255793)
chr4 (350-439)||(48213567-48213656)
chr4 (139-279)||(25110724-25110864)
chr4 (216-292)||(9389301-9389377)
chr4 (139-219)||(9333122-9333202)
chr4 (139-219)||(9386905-9386985)
chr4 (50-110)||(27409245-27409305)
chr4 (351-413)||(46387823-46387885)
chr4 (50-110)||(18462462-18462522)
chr4 (50-110)||(9333069-9333129)
chr4 (50-110)||(9386852-9386912)
chr4 (49-119)||(25110848-25110918)
chr4 (361-405)||(54781947-54781991)
chr4 (50-110)||(10255798-10255858)
[»] scaffold0927 (2 HSPs)
scaffold0927 (139-292)||(2300-2453)
scaffold0927 (50-110)||(2446-2506)
[»] chr7 (10 HSPs)
chr7 (139-292)||(6887436-6887589)
chr7 (139-292)||(10358485-10358638)
chr7 (151-292)||(42104505-42104646)
chr7 (49-110)||(10358631-10358692)
chr7 (50-110)||(6887383-6887443)
chr7 (50-110)||(42104651-42104711)
chr7 (352-439)||(21505080-21505167)
chr7 (55-101)||(33997670-33997716)
chr7 (184-218)||(47383039-47383073)
chr7 (50-110)||(47383111-47383171)
[»] chr3 (7 HSPs)
chr3 (151-292)||(48935382-48935523)
chr3 (50-110)||(48935528-48935588)
chr3 (184-295)||(1828639-1828754)
chr3 (352-439)||(13503385-13503472)
chr3 (50-120)||(50812393-50812463)
chr3 (50-120)||(50863401-50863471)
chr3 (50-110)||(1828792-1828852)
[»] scaffold0119 (1 HSPs)
scaffold0119 (139-292)||(32806-32959)
[»] chr2 (8 HSPs)
chr2 (139-292)||(1279731-1279884)
chr2 (49-110)||(1279677-1279738)
chr2 (351-406)||(33842410-33842465)
chr2 (151-292)||(19917363-19917509)
chr2 (140-289)||(34599233-34599384)
chr2 (400-439)||(33845645-33845684)
chr2 (369-439)||(22849589-22849659)
chr2 (50-119)||(19917298-19917367)
[»] chr1 (5 HSPs)
chr1 (139-292)||(35625851-35626004)
chr1 (50-119)||(35625988-35626057)
chr1 (151-292)||(48529652-48529797)
chr1 (383-433)||(32679916-32679966)
chr1 (383-433)||(33906613-33906663)
[»] chr6 (8 HSPs)
chr6 (139-292)||(33623014-33623167)
chr6 (140-295)||(28696148-28696307)
chr6 (355-439)||(5953920-5954004)
chr6 (50-110)||(33622961-33623021)
chr6 (50-110)||(26717393-26717453)
chr6 (352-439)||(24177775-24177862)
chr6 (357-433)||(4084596-4084672)
chr6 (50-110)||(28696301-28696361)
[»] scaffold0044 (1 HSPs)
scaffold0044 (351-439)||(11097-11185)
[»] scaffold0068 (1 HSPs)
scaffold0068 (351-439)||(5272-5360)
[»] chr8 (5 HSPs)
chr8 (352-439)||(13523056-13523143)
chr8 (352-439)||(13612591-13612678)
chr8 (188-292)||(2894056-2894162)
chr8 (50-108)||(2893954-2894012)
chr8 (232-288)||(32394797-32394853)
[»] scaffold0006 (1 HSPs)
scaffold0006 (362-439)||(203101-203178)


Alignment Details
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 139 - 292
Target Start/End: Original strand, 30724233 - 30724386
Alignment:
Q  139 attcaaaccagaattttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcattaaacctaacgactgaatta 238  Q
    ||||||||| | ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30724233 attcaaaccggtattttaaaatctgaaccgtttatcaaccttgataaagtacaagataattgatcgaacaactaggtcattaaacctaacgactgaatta 30724332  T
Q  239 aatgactcgacttcaataaatagatgtatagatattaaatcgaattgaatcaaa 292  Q
    |||||||| ||||||||||| |||||||||| ||||||||||||||||||||||    
T  30724333 aatgactcaacttcaataaacagatgtataggtattaaatcgaattgaatcaaa 30724386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 139 - 292
Target Start/End: Original strand, 30691264 - 30691417
Alignment:
Q  139 attcaaaccagaattttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcattaaacctaacgactgaatta 238  Q
    ||||||||| | ||||||||||| ||||||||||||||||||  |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30691264 attcaaaccggtattttaaaatccgaaccgtttatcaaccttgataaactacaagataattgatcgaacaactaggtcattaaacctaacgactgaatta 30691363  T
Q  239 aatgactcgacttcaataaatagatgtatagatattaaatcgaattgaatcaaa 292  Q
    |||||||| ||||||||||| |||||||||| ||||||||||||||||||||||    
T  30691364 aatgactcaacttcaataaacagatgtataggtattaaatcgaattgaatcaaa 30691417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 139 - 292
Target Start/End: Complemental strand, 18475818 - 18475665
Alignment:
Q  139 attcaaaccagaattttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcattaaacctaacgactgaatta 238  Q
    ||||||||||| |||||||||||||||| ||||||||||| |  |||||||||||||||||||| |||||| ||||||||| ||||||||||| ||||||    
T  18475818 attcaaaccagtattttaaaatctgaactgtttatcaaccctgataaagtacaagataattgattgaacaactaggtcattgaacctaacgacagaatta 18475719  T
Q  239 aatgactcgacttcaataaatagatgtatagatattaaatcgaattgaatcaaa 292  Q
    |||||||||||||||||||| |||||||||| |||||||| |||||||||||||    
T  18475718 aatgactcgacttcaataaacagatgtataggtattaaattgaattgaatcaaa 18475665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 351 - 439
Target Start/End: Complemental strand, 21708638 - 21708550
Alignment:
Q  351 gggaagaaaactattgcatttcattaaaaagaatgtgttcaatacaattaggtatttctaccagaatttgggagctagctgatgataag 439  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||    
T  21708638 gggaagaaaactattgcatttcattaaatagattgtgttcaatacaatgaggtatttctaccaaaatttgggagctagctgataataag 21708550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 140 - 292
Target Start/End: Original strand, 23912581 - 23912737
Alignment:
Q  140 ttcaaaccagaattttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcat----taaacctaacgactgaa 235  Q
    |||||||||| |||||||||||||||| | ||||||||      ||||||||||||||||||| |||||||||||||||    | ||||| || ||||||    
T  23912581 ttcaaaccagtattttaaaatctgaactgattatcaactcaaacaaagtacaagataattgattgaacaattaggtcatcgattgaacctcacaactgaa 23912680  T
Q  236 ttaaatgactcgacttcaataaatagatgtatagatattaaatcgaattgaatcaaa 292  Q
    || |||||||||||||| ||||| |||||||||  ||||||||| ||||||||||||    
T  23912681 ttgaatgactcgacttctataaacagatgtataagtattaaatcaaattgaatcaaa 23912737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 30691211 - 30691271
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaac 110  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  30691211 attttatcattggttagtttcaatgactacaaatttgttatttgttgaatataattcaaac 30691271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 30724180 - 30724240
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaac 110  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  30724180 attttatcattggttagtttcaatgactacaaatttgttatttgttgaatataattcaaac 30724240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 151 - 292
Target Start/End: Complemental strand, 29331815 - 29331670
Alignment:
Q  151 attttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcattaa----acctaacgactgaattaaatgactc 246  Q
    ||||||||||||||| || ||||||||      |||||||||||||||||||||||||| ||||||||| |    ||   || ||| |||| ||||||||    
T  29331815 attttaaaatctgaaacgattatcaactcaaacaaagtacaagataattgatcgaacaactaggtcattgattgaactccacaactaaattgaatgactc 29331716  T
Q  247 gacttcaataaatagatgtatagatattaaatcgaattgaatcaaa 292  Q
    |||||| ||||| |||||||||  ||||||||||||||||||||||    
T  29331715 gacttctataaacagatgtataagtattaaatcgaattgaatcaaa 29331670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 18475873 - 18475802
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttat--tatttgttgaatataattcaaacaagaatttt 119  Q
    |||||||||||||||||||  ||||||||||||||| |  ||||||||||||||||||||||| || |||||    
T  18475873 attttatcattggttagttcgaatgactacaaatttgttatatttgttgaatataattcaaaccagtatttt 18475802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 29331880 - 29331811
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaacaagaatttt 119  Q
    |||||||||||||||||||| ||||||||  || || |||||||||||||||| ||| ||| || |||||    
T  29331880 attttatcattggttagtttgaatgactatgaacttgttatttgttgaatatagttccaactagtatttt 29331811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 139 - 292
Target Start/End: Original strand, 27409298 - 27409451
Alignment:
Q  139 attcaaaccagaattttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcattaaacctaacgactgaatta 238  Q
    ||||||||| | ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  27409298 attcaaaccggtattttaaaatctgaaccgtttatcaaccttaataaagtacaagataattgatcgaacaactaggtcattgaacctaacgactgaatta 27409397  T
Q  239 aatgactcgacttcaataaatagatgtatagatattaaatcgaattgaatcaaa 292  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  27409398 aatgactcgacttcaataaacagatgtataggtattaaatcgaattgaatcaaa 27409451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 139 - 292
Target Start/End: Complemental strand, 18462469 - 18462315
Alignment:
Q  139 attcaaaccagaattttaaaatctgaaccgtttatcaacctttttaaa-gtacaagataattgatcgaacaattaggtcattaaacctaacgactgaatt 237  Q
    ||||||||| | ||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  18462469 attcaaaccggtattttaaaatctgaaccgtttatcaaccttaataaaagtacaagataattgatcgaacaactaggtcattgaacctaacgactgaatt 18462370  T
Q  238 aaatgactcgacttcaataaatagatgtatagatattaaatcgaattgaatcaaa 292  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  18462369 aaatgactcgacttcaataaaaagatgtataggtattaaatcgaattgaatcaaa 18462315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 151 - 292
Target Start/End: Complemental strand, 10255793 - 10255652
Alignment:
Q  151 attttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcattaaacctaacgactgaattaaatgactcgact 250  Q
    |||||||||| ||||| |||||||||||||  |||||| |||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||    
T  10255793 attttaaaatatgaactgtttatcaaccttgataaagttcaagataattgatcgaacaactaggccattgaacctaacgactgaattaaatgactcgact 10255694  T
Q  251 tcaataaatagatgtatagatattaaatcgaattgaatcaaa 292  Q
    |||||||| |||||||||| ||| ||||||||||||||||||    
T  10255693 tcaataaacagatgtataggtataaaatcgaattgaatcaaa 10255652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 350 - 439
Target Start/End: Complemental strand, 48213656 - 48213567
Alignment:
Q  350 agggaagaaaactattgcatttcattaaaaagaatgtgttcaatacaattaggtatttctaccagaatttgggagctagctgatgataag 439  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  48213656 agggaagaaaactattgcatttcattaaatagaatgtgttcaatacaatgaggtatttctaccaaaatttgggagctagctgatgataag 48213567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 139 - 279
Target Start/End: Complemental strand, 25110864 - 25110724
Alignment:
Q  139 attcaaaccagaattttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcattaaacctaacgactgaatta 238  Q
    ||||||||||| |||||||||||||| ||||||||||||     |||| ||||||| |||||||||||||| ||||||||| ||||||| ||||||||||    
T  25110864 attcaaaccagtattttaaaatctgatccgtttatcaactcagataaaatacaagaaaattgatcgaacaactaggtcattgaacctaatgactgaatta 25110765  T
Q  239 aatgactcgacttcaataaatagatgtatagatattaaatc 279  Q
    ||| |||| ||||||||||| ||||||| | ||||||||||    
T  25110764 aataactcaacttcaataaacagatgtaaacatattaaatc 25110724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 9389301 - 9389377
Alignment:
Q  216 cattaaacctaacgactgaattaaatgactcgacttcaataaatagatgtatagatattaaatcgaattgaatcaaa 292  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||    
T  9389301 cattgaacctaacgactgaattaaatgactcgacttcaataaacagatgtatatgtattaaatcgaattgaatcaaa 9389377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 9333122 - 9333202
Alignment:
Q  139 attcaaaccagaattttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcatt 219  Q
    ||||||||| |  |||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||| |||||||||    
T  9333122 attcaaaccggtgttttaaaatctgaaccgtttatcaaccttgataaagtacaagataattgatcaaacaactaggtcatt 9333202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 9386905 - 9386985
Alignment:
Q  139 attcaaaccagaattttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcatt 219  Q
    ||||||||| |  |||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||| |||||||||    
T  9386905 attcaaaccggtgttttaaaatctgaaccgtttatcaaccttgataaagtacaagataattgatcaaacaactaggtcatt 9386985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 27409245 - 27409305
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaac 110  Q
    |||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||    
T  27409245 attttatcattggttagttccaatgactacaaatttgttatttgttgaatataattcaaac 27409305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 413
Target Start/End: Original strand, 46387823 - 46387885
Alignment:
Q  351 gggaagaaaactattgcatttcattaaaaagaatgtgttcaatacaattaggtatttctacca 413  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||   |||||||||||||    
T  46387823 gggaagaaaactattgcatttcattaaatagaatgtgttcaatacaacgcggtatttctacca 46387885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 18462522 - 18462462
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaac 110  Q
    |||||||||||||||||||  ||| ||||||||||| ||||||||||||||||||||||||    
T  18462522 attttatcattggttagttccaatcactacaaatttgttatttgttgaatataattcaaac 18462462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 9333069 - 9333129
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaac 110  Q
    |||||||||||||||||||  |||||||| |||||| ||||||||||||| ||||||||||    
T  9333069 attttatcattggttagttccaatgactataaatttgttatttgttgaatttaattcaaac 9333129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 9386852 - 9386912
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaac 110  Q
    |||||||||||||||||||  |||||||| |||||| ||||||||||||| ||||||||||    
T  9386852 attttatcattggttagttccaatgactataaatttgttatttgttgaatttaattcaaac 9386912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 25110918 - 25110848
Alignment:
Q  49 aattttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaacaagaatttt 119  Q
    ||||||||||||||||||||  || ||| | |||||| |||||||||||||||||||||||| || |||||    
T  25110918 aattttatcattggttagttccaaagaccataaatttgttatttgttgaatataattcaaaccagtatttt 25110848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 54781991 - 54781947
Alignment:
Q  361 ctattgcatttcattaaaaagaatgtgttcaatacaattaggtat 405  Q
    |||||||||||||||||| |||||||||||||||||||| |||||    
T  54781991 ctattgcatttcattaaacagaatgtgttcaatacaattcggtat 54781947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 10255858 - 10255798
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaac 110  Q
    ||||||| ||||||| |||  |||||||| |||||| ||||||||||||||||||| ||||    
T  10255858 attttattattggttggttccaatgactataaatttgttatttgttgaatataatttaaac 10255798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 139 - 292
Target Start/End: Complemental strand, 2453 - 2300
Alignment:
Q  139 attcaaaccagaattttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcattaaacctaacgactgaatta 238  Q
    ||||||||| | ||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||    
T  2453 attcaaaccggtattttaaaatctgaaccgtttatcaaccttaataaagtacaatataattgatcgaacaactaggtcattgaacctaacgactgaatta 2354  T
Q  239 aatgactcgacttcaataaatagatgtatagatattaaatcgaattgaatcaaa 292  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||||||||||    
T  2353 aatgactcgacttcaataaacagatgtataagtattaaatcgaattgaatcaaa 2300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 2506 - 2446
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaac 110  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  2506 attttatcattggttagtttcaatgactacaaatttgttatttgttgaatataattcaaac 2446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 139 - 292
Target Start/End: Original strand, 6887436 - 6887589
Alignment:
Q  139 attcaaaccagaattttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcattaaacctaacgactgaatta 238  Q
    ||||||||| | ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  6887436 attcaaaccggtattttaaaatctgaaccgtttatcaaccttgataaagtacaagataattgatcgaacaactaggtcattgaacctaacgactgaatta 6887535  T
Q  239 aatgactcgacttcaataaatagatgtatagatattaaatcgaattgaatcaaa 292  Q
    |||||||||||||||||||| | |||||| | ||||||||||||||||||||||    
T  6887536 aatgactcgacttcaataaacaaatgtatcggtattaaatcgaattgaatcaaa 6887589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 139 - 292
Target Start/End: Complemental strand, 10358638 - 10358485
Alignment:
Q  139 attcaaaccagaattttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcattaaacctaacgactgaatta 238  Q
    ||||||||| | ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  10358638 attcaaaccggtattttaaaatctgaaccgtttatcaaccttgataaagtacaagataattgatcgaacaactaggtcattgaacctaacgactgaatta 10358539  T
Q  239 aatgactcgacttcaataaatagatgtatagatattaaatcgaattgaatcaaa 292  Q
    |||||| ||||||||||||| |||||||||| ||||||||| || |||||||||    
T  10358538 aatgacccgacttcaataaacagatgtataggtattaaatcaaaatgaatcaaa 10358485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 151 - 292
Target Start/End: Complemental strand, 42104646 - 42104505
Alignment:
Q  151 attttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcattaaacctaacgactgaattaaatgactcgact 250  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  42104646 attttaaaatctgaaccgtttatcaaccttgataaaggacaagataattgatcgaacaactaggtcattgaacctaacgactgaattaaatgactcgact 42104547  T
Q  251 tcaataaatagatgtatagatattaaatcgaattgaatcaaa 292  Q
    ||||||||  ||||||||| ||||||||||||||||||||||    
T  42104546 tcaataaaccgatgtataggtattaaatcgaattgaatcaaa 42104505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 10358692 - 10358631
Alignment:
Q  49 aattttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaac 110  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||    
T  10358692 aattttatcattggttagttccaatgactacaaatttgttatttgttgaatataattcaaac 10358631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 6887383 - 6887443
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaac 110  Q
    |||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||    
T  6887383 attttatcattggttagttccaatgactacaaatttgttatttgttgaatataattcaaac 6887443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 42104711 - 42104651
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaac 110  Q
    |||||||||||||||| ||  ||||||||||||||| ||||||||||||||||||||||||    
T  42104711 attttatcattggttacttccaatgactacaaatttgttatttgttgaatataattcaaac 42104651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 352 - 439
Target Start/End: Complemental strand, 21505167 - 21505080
Alignment:
Q  352 ggaagaaaactattgcatttcattaaaaagaatgtgttcaatacaattaggtatttctaccagaatttgggagctagctgatgataag 439  Q
    |||| ||| |||||||||||||||||| |||||||||||||||||||| |||||    ||||  ||||||||||||||||| ||||||    
T  21505167 ggaataaatctattgcatttcattaaacagaatgtgttcaatacaatttggtatggtaaccaatatttgggagctagctgaagataag 21505080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 33997670 - 33997716
Alignment:
Q  55 atcattggttagttttaatgactacaaatttattatttgttgaatat 101  Q
    ||||||||||||||  |||||||| ||| ||||||||||||||||||    
T  33997670 atcattggttagttcgaatgactataaacttattatttgttgaatat 33997716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 47383073 - 47383039
Alignment:
Q  184 aaagtacaagataattgatcgaacaattaggtcat 218  Q
    |||||||||||||||||||||||||| ||||||||    
T  47383073 aaagtacaagataattgatcgaacaactaggtcat 47383039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 47383171 - 47383111
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaac 110  Q
    ||||||||||||||| |||  |||||||| | | || |||||||||||||||| |||||||    
T  47383171 attttatcattggttcgttcgaatgactatagacttgttatttgttgaatatagttcaaac 47383111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 151 - 292
Target Start/End: Complemental strand, 48935523 - 48935382
Alignment:
Q  151 attttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcattaaacctaacgactgaattaaatgactcgact 250  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  48935523 attttaaaatctgaaccgtttatcaaccttaataaagtacaagataattgatcgaacaactaggtcattgaacctaacgactgaattaaataactcgact 48935424  T
Q  251 tcaataaatagatgtatagatattaaatcgaattgaatcaaa 292  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  48935423 tcaataaacagatgtataggtattaaatcgaattgaatcaaa 48935382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 48935588 - 48935528
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaac 110  Q
    ||||||| |||||||||||  ||||||||||||||| ||||||||||||||||||||||||    
T  48935588 attttattattggttagttccaatgactacaaatttgttatttgttgaatataattcaaac 48935528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 295
Target Start/End: Complemental strand, 1828754 - 1828639
Alignment:
Q  184 aaagtacaagataattgatcgaacaattaggtc----attaaacctaacgactgaattaaatgactcgacttcaataaatagatgtatagatattaaatc 279  Q
    |||||||||||||||||||||||||| ||||||    ||| ||||| | |  | ||||||||| ||||||||| ||||| | |||||||  ||||||||     
T  1828754 aaagtacaagataattgatcgaacaactaggtcattgattgaacctcatggttaaattaaatggctcgacttctataaacaaatgtatatgtattaaatt 1828655  T
Q  280 gaattgaatcaaatga 295  Q
    ||||||||||| ||||    
T  1828654 gaattgaatcagatga 1828639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 439
Target Start/End: Complemental strand, 13503472 - 13503385
Alignment:
Q  352 ggaagaaaactattgcatttcattaaaaagaatgtgttcaatacaattaggtatttctaccagaatttgggagctagctgatgataag 439  Q
    |||| ||| |||||||||||||||||| |  ||||||||||||||||| |||||    ||||  ||||||||||||||||| ||||||    
T  13503472 ggaataaatctattgcatttcattaaacaagatgtgttcaatacaatttggtatggtaaccaatatttgggagctagctgaagataag 13503385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 50812463 - 50812393
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaacaagaattttt 120  Q
    |||||||||||||||||||| ||| |||| ||| || |||||||||||||||| || |||| || ||||||    
T  50812463 attttatcattggttagtttgaataactataaacttgttatttgttgaatatagttgaaactagtattttt 50812393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 50863401 - 50863471
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaacaagaattttt 120  Q
    |||||||||||||||||||| ||| |||| ||| || |||||||||||||||| || |||| || ||||||    
T  50863401 attttatcattggttagtttgaataactataaacttgttatttgttgaatatagttgaaactagtattttt 50863471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 1828852 - 1828792
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaac 110  Q
    |||||||||||||||||||  |||||||| | | || |||||||||||||||| |||||||    
T  1828852 attttatcattggttagttcgaatgactatagacttgttatttgttgaatatagttcaaac 1828792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 139 - 292
Target Start/End: Complemental strand, 32959 - 32806
Alignment:
Q  139 attcaaaccagaattttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcattaaacctaacgactgaatta 238  Q
    ||||||||||| ||| |||||||||| |||||||||||||    ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||    
T  32959 attcaaaccagtattctaaaatctgagccgtttatcaacccagataaagtacaagataattgatcgaacaactaggtcattgaacctaatgactgaatta 32860  T
Q  239 aatgactcgacttcaataaatagatgtatagatattaaatcgaattgaatcaaa 292  Q
    |||||||| ||||||||||| |||||||||| ||||||||||||||||||||||    
T  32859 aatgactctacttcaataaacagatgtataggtattaaatcgaattgaatcaaa 32806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 139 - 292
Target Start/End: Original strand, 1279731 - 1279884
Alignment:
Q  139 attcaaaccagaattttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcattaaacctaacgactgaatta 238  Q
    ||||||||||| ||| |||||||||| |||||||||||||    ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||    
T  1279731 attcaaaccagtattctaaaatctgagccgtttatcaacccagataaagtacaagataattgatcgaacaactaggtcattgaacctaatgactgaatta 1279830  T
Q  239 aatgactcgacttcaataaatagatgtatagatattaaatcgaattgaatcaaa 292  Q
    |||||||| ||||||||||| |||||||||| |||||||| |||||||||||||    
T  1279831 aatgactctacttcaataaacagatgtataggtattaaattgaattgaatcaaa 1279884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 1279677 - 1279738
Alignment:
Q  49 aattttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaac 110  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||    
T  1279677 aattttatcattggttagttccaatgactacaaatttgttatttgttgaatataattcaaac 1279738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 33842410 - 33842465
Alignment:
Q  351 gggaagaaaactattgcatttcattaaaaagaatgtgttcaatacaattaggtatt 406  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  33842410 gggaagaaaactattgcatttcattaaatagaatgtgttcaatacaatgaggtatt 33842465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 151 - 292
Target Start/End: Original strand, 19917363 - 19917509
Alignment:
Q  151 attttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcat----taaacctaacgactgaattaaatgactc 246  Q
    |||||||||||||||||| |||||||||     |||||||||||||||||||||||||| ||||| ||    | ||||  |||||| | || ||||||||    
T  19917363 attttaaaatctgaaccgattatcaaccaaac-aaagtacaagataattgatcgaacaactaggttatcgattgaaccccacgactaagttgaatgactc 19917461  T
Q  247 gacttcaataaatagatgtataga--tattaaatcgaattgaatcaaa 292  Q
    || ||| ||||| ||||||||| |  ||||||||||||||||||||||    
T  19917462 gagttctataaacagatgtatataagtattaaatcgaattgaatcaaa 19917509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 289
Target Start/End: Original strand, 34599233 - 34599384
Alignment:
Q  140 ttcaaaccagaattttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcattaa----acctaacgactgaa 235  Q
    |||||||||| |||||||||| ||||| | ||||||||      ||||||||||||| ||||| ||| || ||||||||| |    |||| |||||||||    
T  34599233 ttcaaaccagtattttaaaatttgaactgattatcaactcaaacaaagtacaagata-ttgattgaataactaggtcattgattgaacctcacgactgaa 34599331  T
Q  236 ttaaatgactcgacttcaataaatagatgtatagatattaaatcgaattgaatc 289  Q
    || |||||||| |||||| |||| |||||||||  |||||||||||||||||||    
T  34599332 ttgaatgactcaacttca-taaacagatgtataagtattaaatcgaattgaatc 34599384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 400 - 439
Target Start/End: Original strand, 33845645 - 33845684
Alignment:
Q  400 aggtatttctaccagaatttgggagctagctgatgataag 439  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  33845645 aggtatttctaccaaaatttgggagctagctgatgataag 33845684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 439
Target Start/End: Complemental strand, 22849659 - 22849589
Alignment:
Q  369 tttcattaaaaagaatgtgttcaatacaattaggtatttctaccagaatttgggagctagctgatgataag 439  Q
    |||||||||| |||||||||||||||||||| |||||    ||||  ||||||||||||||||| ||||||    
T  22849659 tttcattaaacagaatgtgttcaatacaatttggtatggtaaccaatatttgggagctagctgaagataag 22849589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 19917298 - 19917367
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaacaagaatttt 119  Q
    |||||||||||||||||||| ||||||||   | || |||||||||||||||||||| ||| || |||||    
T  19917298 attttatcattggttagtttgaatgactatggacttgttatttgttgaatataattccaactagtatttt 19917367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 139 - 292
Target Start/End: Complemental strand, 35626004 - 35625851
Alignment:
Q  139 attcaaaccagaattttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcattaaacctaacgactgaatta 238  Q
    ||||||||||| ||||||||||||||||  ||||||||||    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  35626004 attcaaaccagtattttaaaatctgaacaatttatcaacccagataaagtacaagataattgatcgaacaactaggtcattgaacctaacgactgaatta 35625905  T
Q  239 aatgactcgacttcaataaatagatgtatagatattaaatcgaattgaatcaaa 292  Q
    |||||||||| ||||||||| |||||||||  |||||||| |||||||||||||    
T  35625904 aatgactcgaattcaataaacagatgtataagtattaaattgaattgaatcaaa 35625851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 35626057 - 35625988
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaacaagaatttt 119  Q
    |||||| ||||||||| ||  ||||||||||||||| |||||||||||||||||||||||| || |||||    
T  35626057 attttaccattggttatttcgaatgactacaaatttgttatttgttgaatataattcaaaccagtatttt 35625988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 292
Target Start/End: Complemental strand, 48529797 - 48529652
Alignment:
Q  151 attttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcat----taaacctaacgactgaattaaatgactc 246  Q
    ||||||||||||||| || ||||||||      |||||| |||||||||||||| |||| ||||||||    | ||||| ||||||||||| ||||||||    
T  48529797 attttaaaatctgaatcgattatcaactaagacaaagtataagataattgatcgcacaactaggtcatcgattgaacctcacgactgaattgaatgactc 48529698  T
Q  247 gacttcaataaatagatgta-tagatattaaatcgaattgaatcaaa 292  Q
    |||||| ||||| | | ||| ||| ||||||||| ||||||||||||    
T  48529697 gacttctataaacaaaagtactag-tattaaatcaaattgaatcaaa 48529652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 433
Target Start/End: Original strand, 32679916 - 32679966
Alignment:
Q  383 atgtgttcaatacaattaggtatttctaccagaatttgggagctagctgat 433  Q
    ||||||||||||||||  |||||||||||||  |||||||| |||||||||    
T  32679916 atgtgttcaatacaatatggtatttctaccattatttgggaactagctgat 32679966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 433
Target Start/End: Original strand, 33906613 - 33906663
Alignment:
Q  383 atgtgttcaatacaattaggtatttctaccagaatttgggagctagctgat 433  Q
    ||||||||||||||||  |||||||||||||  |||||||| |||||||||    
T  33906613 atgtgttcaatacaatatggtatttctaccactatttgggaactagctgat 33906663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 139 - 292
Target Start/End: Original strand, 33623014 - 33623167
Alignment:
Q  139 attcaaaccagaattttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcattaaacctaacgactgaatta 238  Q
    ||||||||||| |||| |||||||||||||||||||||||||  |||| |||||||||||||||| ||||| |||| |||| |||||||||||||| |||    
T  33623014 attcaaaccaggatttcaaaatctgaaccgtttatcaaccttgataaaatacaagataattgatcaaacaactaggacattgaacctaacgactgagtta 33623113  T
Q  239 aatgactcgacttcaataaatagatgtatagatattaaatcgaattgaatcaaa 292  Q
    ||  |||||||||||||||| ||||| |||| ||||||||||||||||||||||    
T  33623114 aagaactcgacttcaataaacagatgaataggtattaaatcgaattgaatcaaa 33623167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 140 - 295
Target Start/End: Complemental strand, 28696307 - 28696148
Alignment:
Q  140 ttcaaaccagaattttaaaatctgaaccgtttatcaacctttttaaagtacaagataattgatcgaacaattaggtcattaa----acctaacgactgaa 235  Q
    |||||||||| |||| |||||||||| || ||||||||      |||||||||||||||||||||||||| ||||||||| |    |||| |||||||||    
T  28696307 ttcaaaccagtatttcaaaatctgaatcgattatcaactcaaacaaagtacaagataattgatcgaacaactaggtcattgattgaacctcacgactgaa 28696208  T
Q  236 ttaaatgactcgacttcaataaatagatgtatagatattaaatcgaattgaatcaaatga 295  Q
    || |||||||||||||  ||||| |||||||||  |||||||||||||||||||||||||    
T  28696207 ttgaatgactcgacttttataaacagatgtataagtattaaatcgaattgaatcaaatga 28696148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 355 - 439
Target Start/End: Original strand, 5953920 - 5954004
Alignment:
Q  355 agaaaactattgcatttcattaaaaagaatgtgttcaatacaattaggtatttctaccagaatttgggagctagctgatgataag 439  Q
    |||||||||||||||||||||||| ||||||||||||||| |||  ||||||||||| |  ||||||||||||  ||||||||||    
T  5953920 agaaaactattgcatttcattaaatagaatgtgttcaatataatgcggtatttctacaaatatttgggagctaattgatgataag 5954004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 33622961 - 33623021
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaac 110  Q
    |||||||||||||||||||  |||||||||| |||| ||||||||||||||||||||||||    
T  33622961 attttatcattggttagttccaatgactacatatttgttatttgttgaatataattcaaac 33623021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 26717393 - 26717453
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaac 110  Q
    |||||||||||||||||||  |||||||| | ||||||||||||||||||||| |||||||    
T  26717393 attttatcattggttagttcgaatgactatagatttattatttgttgaatatagttcaaac 26717453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 439
Target Start/End: Complemental strand, 24177862 - 24177775
Alignment:
Q  352 ggaagaaaactattgcatttcattaaaaagaatgtgttcaatacaattaggtatttctaccagaatttgggagctagctgatgataag 439  Q
    |||| ||| |||||||||||||||||| |  ||||||||||||||||| |||||    ||||  ||||||||||||||||| ||||||    
T  24177862 ggaataaatctattgcatttcattaaacaagatgtgttcaatacaatttggtatggtaaccaatatttgggagctagctgaagataag 24177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 433
Target Start/End: Complemental strand, 4084672 - 4084596
Alignment:
Q  357 aaaactattgcatttcattaaaaagaatgtgttcaatacaattaggtatttctaccagaatttgggagctagctgat 433  Q
    |||| |||||||||||||| |  | |||||||||||||||||  |||||||||||||  |||||| | |||||||||    
T  4084672 aaaattattgcatttcattcatcaaaatgtgttcaatacaatatggtatttctaccaatatttggaaactagctgat 4084596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 28696361 - 28696301
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaaac 110  Q
    |||||||||||||||||||  ||||||||   | || |||||||||||||||| |||||||    
T  28696361 attttatcattggttagttcgaatgactatggacttgttatttgttgaatatagttcaaac 28696301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 351 - 439
Target Start/End: Complemental strand, 11185 - 11097
Alignment:
Q  351 gggaagaaaactattgcatttcattaaaaagaatgtgttcaatacaattaggtatttctaccagaatttgggagctagctgatgataag 439  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  11185 gggaagaaaactattgcatttcattaaatagaatgtgttcaatacaatgaggtatttctaccaaaatttgggagctagctgatgataag 11097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 351 - 439
Target Start/End: Original strand, 5272 - 5360
Alignment:
Q  351 gggaagaaaactattgcatttcattaaaaagaatgtgttcaatacaattaggtatttctaccagaatttgggagctagctgatgataag 439  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||    
T  5272 gggaagaaaactattgcatttcattaaatagattgtgttcaatacaatgaggtatttctaccaaaatttgggagctagctgataataag 5360  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 439
Target Start/End: Original strand, 13523056 - 13523143
Alignment:
Q  352 ggaagaaaactattgcatttcattaaaaagaatgtgttcaatacaattaggtatttctaccagaatttgggagctagctgatgataag 439  Q
    |||| ||| |||||||||||||||||| |||||| ||||||||||||| |||||    ||||  ||||||||||||||||| ||||||    
T  13523056 ggaataaatctattgcatttcattaaagagaatgcgttcaatacaatttggtatggtaaccaatatttgggagctagctgaagataag 13523143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 439
Target Start/End: Original strand, 13612591 - 13612678
Alignment:
Q  352 ggaagaaaactattgcatttcattaaaaagaatgtgttcaatacaattaggtatttctaccagaatttgggagctagctgatgataag 439  Q
    |||| ||| |||||||||||||||||| |||||| ||||||||||||| |||||    ||||  ||||||||||||||||| ||||||    
T  13612591 ggaataaatctattgcatttcattaaagagaatgcgttcaatacaatttggtatggtaaccaatatttgggagctagctgaagataag 13612678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 292
Target Start/End: Original strand, 2894056 - 2894162
Alignment:
Q  188 tacaagataattgatcgaacaattaggtc----attaaacctaacgactgaattaaatgactcgacttcaataaatagatgtatagatattaaatcgaat 283  Q
    |||||||||||||||||||||| ||||||    ||| ||||| ||||||||||| ||| ||||| |||| ||||| ||| |  ||| ||||||||| |||    
T  2894056 tacaagataattgatcgaacaactaggtcatcgattgaacctcacgactgaattgaataactcgccttc-ataaacagacgactag-tattaaatcaaat 2894153  T
Q  284 tgaatcaaa 292  Q
    |||||||||    
T  2894154 tgaatcaaa 2894162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 2893954 - 2894012
Alignment:
Q  50 attttatcattggttagttttaatgactacaaatttattatttgttgaatataattcaa 108  Q
    |||||||||||||||||||| ||| |||| | | || |||||||||||||||| |||||    
T  2893954 attttatcattggttagtttgaataactatagacttgttatttgttgaatatagttcaa 2894012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 32394797 - 32394853
Alignment:
Q  232 tgaattaaatgactcgacttcaataaatagatgtatagatattaaatcgaattgaat 288  Q
    ||||||||||||||||||||| ||||| | || ||||  |||||||| |||||||||    
T  32394797 tgaattaaatgactcgacttctataaacaaatatataagtattaaattgaattgaat 32394853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 439
Target Start/End: Original strand, 203101 - 203178
Alignment:
Q  362 tattgcatttcattaaaaagaatgtgttcaatacaattaggtatttctaccagaatttgggagctagctgatgataag 439  Q
    ||||||||||||||||| |  ||||||||||||||||| |||||    ||||  ||||||||||||||||| ||||||    
T  203101 tattgcatttcattaaacaagatgtgttcaatacaatttggtatggtaaccaatatttgggagctagctgaagataag 203178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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