View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19423_low_3 (Length: 281)
Name: NF19423_low_3
Description: NF19423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19423_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 34776764 - 34777016
Alignment:
| Q |
18 |
gaacaatccttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgattatcattgacatatcaattgatgaaacaa |
117 |
Q |
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| T |
34776764 |
gaacaatccttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgattatcattgacatatcaattgatgaaacaa |
34776863 |
T |
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| Q |
118 |
gtgatgaccgcggattaactgagttgcaattggactatgatttggtgatgcttacaatgtttcttggtaaagaaagaacaaagcaagaatgggaaaaact |
217 |
Q |
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| T |
34776864 |
gtgatgaccggggattaactgagttgcaattggactatgatttggtgatgcttacaatgtttcttggtaaagaaagaacaaagcaagaatgggaaaaact |
34776963 |
T |
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| Q |
218 |
catatatgatgcaggttttagcagctacaaaattacccccatttctggcttca |
270 |
Q |
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| T |
34776964 |
catatatgatgcaggttttagcagctacaaaattacccccatttctggcttca |
34777016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 23 - 270
Target Start/End: Original strand, 34784935 - 34785182
Alignment:
| Q |
23 |
atccttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgattatcattgacatatcaattgatgaaacaagtgat |
122 |
Q |
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| T |
34784935 |
atccttaaagatattgaagaacagcaaagaagctatttcacataaagggaaagatggaaaagtgattatcattgacatatcaattgatgaaacaagtgat |
34785034 |
T |
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| Q |
123 |
gaccgcggattaactgagttgcaattggactatgatttggtgatgcttacaatgtttcttggtaaagaaagaacaaagcaagaatgggaaaaactcatat |
222 |
Q |
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| T |
34785035 |
gatcgtagattaactgagttgcaattggaatatgatttggtgatgcttacaatgttccttggtaaagaaagaacaaagcaagaatgggaaaaactcatat |
34785134 |
T |
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| Q |
223 |
atgatgcaggttttagcagctacaaaattacccccatttctggcttca |
270 |
Q |
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| T |
34785135 |
atgatgcaggttttagcagctacaaaattacccccatttctggcttca |
34785182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 270
Target Start/End: Complemental strand, 11467540 - 11467294
Alignment:
| Q |
24 |
tccttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgattatcattgacatatcaattgatgaaacaagtgatg |
123 |
Q |
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| T |
11467540 |
tccttaaagatattgaataacagcaaagaagctatttcaggaaaaggaaaaaaaggaaagataataatcatagacatatcaattgatgaaacaagtgaag |
11467441 |
T |
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| Q |
124 |
accgcggattaactgagttgcaattggactatgatttggtgatgcttacaatgtttcttggtaaagaaagaacaaagcaagaatgggaaaaactcatata |
223 |
Q |
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| T |
11467440 |
atcgtgagttaaccgagttacaattgcactttgacatggtaatgatgactctacataatggaaaagaaagagaaaagaaagaatggaagaaactcatata |
11467341 |
T |
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| Q |
224 |
tgatgcaggttttagcagctacaaaattacccccatttctggcttca |
270 |
Q |
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| T |
11467340 |
tgatgcaggtttcagtagctacaagattactccaatatgtggcttca |
11467294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 32 - 270
Target Start/End: Original strand, 11524341 - 11524579
Alignment:
| Q |
32 |
gatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgattatcattgacatatcaattgatgaaacaagtgatgaccgcgga |
131 |
Q |
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| T |
11524341 |
gatattgaagaactgcaaagaagctatttcaggaaaagggaaaaaaggaaagataataatcatagacgtatcaattgatgaaacaagtgatgatcatgaa |
11524440 |
T |
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| Q |
132 |
ttaactgagttgcaattggactatgatttggtgatgcttacaatgtttcttggtaaagaaagaacaaagcaagaatgggaaaaactcatatatgatgcag |
231 |
Q |
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||||| |||||||||||| ||| ||| |||| ||| | || || | ||| ||||||||| |||| |||||||| | |||||||| ||||| || | |
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| T |
11524441 |
ttaaccgagttgcaattgcactttgacatggtaatgatgactctgcataatggaaaagaaagagaaaagaaagaatggaagaaactcatctatgacgctg |
11524540 |
T |
|
| Q |
232 |
gttttagcagctacaaaattacccccatttctggcttca |
270 |
Q |
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| T |
11524541 |
gcttcagcagctacaagattactccaatatgtggcttca |
11524579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 11508121 - 11508215
Alignment:
| Q |
27 |
ttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgattatcattgacatatcaattgatgaaacaagtga |
121 |
Q |
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| T |
11508121 |
ttaaagatattgaagaactgcaaaacagctatttcaggaaaagggaaaacgggaaaggtgataatcattgacatatcaattgatgaaacaagtga |
11508215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 11444648 - 11444551
Alignment:
| Q |
24 |
tccttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgattatcattgacatatcaattgatgaaacaagtga |
121 |
Q |
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|||||||||||||| |||| ||||| ||||||||||| ||||| || | ||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
11444648 |
tccttaaagatattagagaattgcaaaaaagctatttcaggaaaagggaaaaaaggaaaggtgataatcattgacatatcaattgatgaaacaagtga |
11444551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 11548460 - 11548557
Alignment:
| Q |
24 |
tccttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgattatcattgacatatcaattgatgaaacaagtga |
121 |
Q |
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||||||||||||||| |||| ||||| ||||||||||| ||||| || | ||||| ||||| |||||||||||||||||||| ||||||||||| |
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| T |
11548460 |
tccttaaagatattggagaattgcaaaaaagctatttcaggaaaagggaaaaaaggaaaggtgataatcattgacatatcaattgacgaaacaagtga |
11548557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 270
Target Start/End: Original strand, 11487725 - 11487905
Alignment:
| Q |
90 |
atcattgacatatcaattgatgaaacaagtgatgaccgcggattaactgagttgcaattggactatgatttggtgatgcttacaatgtttcttggtaaag |
189 |
Q |
| |
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||||| ||| ||||||||||||||||||||||||| | | |||||| |||||||||||| ||| ||| |||| ||| | || || | ||| |||| |
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| T |
11487725 |
atcatagacgtatcaattgatgaaacaagtgatgatcatgaattaaccgagttgcaattgcactttgacatggtaatgatgactctgcataatggaaaag |
11487824 |
T |
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| Q |
190 |
aaagaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattacccccatttctggcttca |
270 |
Q |
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||||| |||| |||||||| | |||||||| ||||| || || || ||||||||||| ||||| || || | |||||||| |
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| T |
11487825 |
aaagagaaaagaaagaatggaagaaactcatctatgacgctggcttcagcagctacaagattactccaatatgtggcttca |
11487905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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