View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19424_high_4 (Length: 562)
Name: NF19424_high_4
Description: NF19424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19424_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 8 - 543
Target Start/End: Complemental strand, 41976822 - 41976288
Alignment:
| Q |
8 |
agataatactttagtgcatgcaccatatgcctttatagtgattcactattttgataacattttagtatactaacaatcaacttcaatgtcaaatctcaaa |
107 |
Q |
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| T |
41976822 |
agataatattttagtgcatgcaccatatgcctttatagtgattcactattttgataacattttagtatactaacaatcaacttcaatgtcaaatctcaaa |
41976723 |
T |
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| Q |
108 |
gcgggttggggtcaactaagtagtaatcatactgttatagtggtttgcacatagctctggacataattcttgtactgtccttcatgtaaaaagtttattt |
207 |
Q |
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| T |
41976722 |
gcgggttggg-tcaactaagtagtaatcatactgttatagtggtttgcacatagctctggacataattcttgttctgtccttcatgtaaaaagtttattt |
41976624 |
T |
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| Q |
208 |
tgagccgtttaaatttgaccatatgcctggagatattttagttttggaataaaagttgtatttatggaccttggatatttgaaggctgtgctaattgtca |
307 |
Q |
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| T |
41976623 |
tgagccgtttaaatttgaccatatgcctggagatattttagttttggaataaaagttgtatttatggaccttggatatttgaaggctgtgctaattgtca |
41976524 |
T |
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| Q |
308 |
agtttttatggcttcttgtgcagctctagctgccaagagaaacaaatatcagaggcagaaatcactgatgattcttgagctggagagtcaacacgccaaa |
407 |
Q |
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| T |
41976523 |
agtttttatggcttcttgtgcagctctagctgccaagagaaacaaatatcagaggcagaaatcactgatgattcttgagctggagagtcaacacgccaaa |
41976424 |
T |
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| Q |
408 |
ggattcccttcaccttttactcctctataacatgttttaattaaaatagaagattgatttcacagttttcagatgaatatacatcatatactgcatagag |
507 |
Q |
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| T |
41976423 |
ggattcccttcaccttttactcctctataacatgttttaattaaaatagaagattgatttcacagttttcagataaatatacatcatatactgcatagag |
41976324 |
T |
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| Q |
508 |
aaaataattcaatgtaagcttgtggcaaccttgctc |
543 |
Q |
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| T |
41976323 |
aaaataattcaatctaagcttgtggcaaccttgctc |
41976288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 334 - 421
Target Start/End: Original strand, 22091831 - 22091918
Alignment:
| Q |
334 |
tagctgccaagagaaacaaatatcagaggcagaaatcactgatgattcttgagctggagagtcaacacgccaaaggattcccttcacc |
421 |
Q |
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| T |
22091831 |
tagctgccaagagaaaccgatatcagaggcaaaaatctttgatggttcttgagatggagagtcaacacgctaagggactaccttcacc |
22091918 |
T |
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