View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19424_low_12 (Length: 231)
Name: NF19424_low_12
Description: NF19424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19424_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 3744336 - 3744475
Alignment:
| Q |
74 |
ccttcacagagaatgcattcgaaaggtgaacaagggaaccaaacaaggtcgctacctgtgtccatgtagagtgttatgagttgtggagggtttgaaccta |
173 |
Q |
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| T |
3744336 |
ccttcacagagaatgcattcgaaaggtgaacaagggaaccaaacaaggtcgctacctgtgtccatgtagagtgttatgagttgtggagggtttgaaccta |
3744435 |
T |
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| Q |
174 |
ggttgaaggagagggtgtaatcactacctggagcaagagg |
213 |
Q |
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| T |
3744436 |
ggttgaaggagagggtgtaatcactacctggagcaagagg |
3744475 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 41705561 - 41705481
Alignment:
| Q |
76 |
ttcacagagaatgcattcgaaaggtgaacaagggaaccaaacaaggtcgctacctgtgtccatgtagagtgttatgagttg |
156 |
Q |
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| T |
41705561 |
ttcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttg |
41705481 |
T |
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