View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19424_low_13 (Length: 219)

Name: NF19424_low_13
Description: NF19424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19424_low_13
NF19424_low_13
[»] chr3 (10 HSPs)
chr3 (11-202)||(23669168-23669359)
chr3 (11-202)||(24041444-24041635)
chr3 (118-202)||(41569169-41569253)
chr3 (117-202)||(51453115-51453200)
chr3 (11-82)||(23673587-23673658)
chr3 (11-82)||(24045863-24045934)
chr3 (11-70)||(23684709-23684768)
chr3 (11-70)||(24056946-24057005)
chr3 (117-169)||(23685025-23685077)
chr3 (117-169)||(24057262-24057314)
[»] chr4 (1 HSPs)
chr4 (117-202)||(34986587-34986672)
[»] chr7 (1 HSPs)
chr7 (117-202)||(21405656-21405741)
[»] chr2 (1 HSPs)
chr2 (117-201)||(24024265-24024349)
[»] chr8 (1 HSPs)
chr8 (11-111)||(35686311-35686413)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 23669168 - 23669359
Alignment:
Q  11 gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttatgattagtaacaaacaaggatatgttaaataagcaaatatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23669168 gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttatgattagtaacaaacaaggatatgttaaataagcaaatatt 23669267  T
Q  111 tactttgaaaataatgaatttactttgaaacaaggcaatgtcaataaaacattgtaagagtgcattactgcattgtacttcaaactcctacc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23669268 tactttgaaaataatgaatttactttgaaacaaggcaatgtcaataaaacactgtaagagtgcattactgcattgtacttcaaactcctacc 23669359  T

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Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 24041444 - 24041635
Alignment:
Q  11 gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttatgattagtaacaaacaaggatatgttaaataagcaaatatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24041444 gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttatgattagtaacaaacaaggatatgttaaataagcaaatatt 24041543  T
Q  111 tactttgaaaataatgaatttactttgaaacaaggcaatgtcaataaaacattgtaagagtgcattactgcattgtacttcaaactcctacc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24041544 tactttgaaaataatgaatttactttgaaacaaggcaatgtcaataaaacactgtaagagtgcattactgcattgtacttcaaactcctacc 24041635  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 41569253 - 41569169
Alignment:
Q  118 aaaataatgaatttactttgaaacaaggcaatgtcaataaaacattgtaagagtgcattactgcattgtacttcaaactcctacc 202  Q
    ||||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||| ||||||||||||||    
T  41569253 aaaatgatgaatttactttgaaacaaggcaatgtcaataaaagactgtaagcgtgcattactgcattgtatttcaaactcctacc 41569169  T

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Target: chr3; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 51453200 - 51453115
Alignment:
Q  117 gaaaataatgaatttactttgaaacaaggcaatgtcaataaaacattgtaagagtgcattactgcattgtacttcaaactcctacc 202  Q
    |||||| ||||||||||||||||||||| |||| ||||||||||| | ||||||||||||| ||||||||||||||||||||||||    
T  51453200 gaaaatgatgaatttactttgaaacaagacaatttcaataaaacactctaagagtgcattagtgcattgtacttcaaactcctacc 51453115  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 23673587 - 23673658
Alignment:
Q  11 gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttatgattagtaacaa 82  Q
    ||||||||||| ||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23673587 gaagaatatttacagaacgaagataattaagaccttgaagtaaccgaaataagagtttatgattagtaacaa 23673658  T

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Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 24045863 - 24045934
Alignment:
Q  11 gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttatgattagtaacaa 82  Q
    ||||||||||| ||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24045863 gaagaatatttacagaacgaagataattaagaccttgaagtaaccgaaataagagtttatgattagtaacaa 24045934  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 23684709 - 23684768
Alignment:
Q  11 gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttat 70  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  23684709 gaagaatatttgcagaatgaagataattaagaccttgaagtaactgaaacaagagtttat 23684768  T

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Target: chr3; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 24056946 - 24057005
Alignment:
Q  11 gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttat 70  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  24056946 gaagaatatttgcagaatgaagataattaagaccttgaagtaactgaaacaagagtttat 24057005  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 23685025 - 23685077
Alignment:
Q  117 gaaaataatgaatttactttgaaacaaggcaatgtcaataaaacattgtaaga 169  Q
    |||||| |||||||||||||||||||||||| ||||||||||||| |||||||    
T  23685025 gaaaatgatgaatttactttgaaacaaggcagtgtcaataaaacactgtaaga 23685077  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 24057262 - 24057314
Alignment:
Q  117 gaaaataatgaatttactttgaaacaaggcaatgtcaataaaacattgtaaga 169  Q
    |||||| |||||||||||||||||||||||| ||||||||||||| |||||||    
T  24057262 gaaaatgatgaatttactttgaaacaaggcagtgtcaataaaacactgtaaga 24057314  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 34986672 - 34986587
Alignment:
Q  117 gaaaataatgaatttactttgaaacaaggcaatgtcaataaaacattgtaagagtgcattactgcattgtacttcaaactcctacc 202  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34986672 gaaaatgatgaatttactttgaaacaaggcaatgtcaataaaacactgtaagagtgcattactgcattgtacttcaaactcctacc 34986587  T

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Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 21405656 - 21405741
Alignment:
Q  117 gaaaataatgaatttactttgaaacaaggcaatgtcaataaaacattgtaagagtgcattactgcattgtacttcaaactcctacc 202  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  21405656 gaaaatgatgaatttactttgaaacaaggcaatgtcaataaaacactgtaagagtgcattactacattgtacttcaaactcctacc 21405741  T

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Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 24024265 - 24024349
Alignment:
Q  117 gaaaataatgaatttactttgaaacaaggcaatgtcaataaaacattgtaagagtgcattactgcattgtacttcaaactcctac 201  Q
    |||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  24024265 gaaaatgatgaatttactttgaaacaagacaatgtcaataaaacactgtaagagtgcattactgcattgtactttaaactcctac 24024349  T

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Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 35686413 - 35686311
Alignment:
Q  11 gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttatgattagtaacaa--acaaggatatgttaaataagcaaata 108  Q
    |||||| ||||||||| |||||||| || |||||| | |||| || ||||||||||||||||||||||||||  |||||||||||| || ||||||||||    
T  35686413 gaagaacatttgcagagtggagatatttgagacctaggagtagctaaaataagagtttatgattagtaacaatcacaaggatatgtaaagtaagcaaata 35686314  T
Q  109 ttt 111  Q
    |||    
T  35686313 ttt 35686311  T

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