View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19424_low_14 (Length: 217)
Name: NF19424_low_14
Description: NF19424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19424_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 38999203 - 38999388
Alignment:
| Q |
17 |
tgaagagttatacattgccttatttctgcatcaatttttcctagccaaggtgaatttatacctggttttgatgcaggttcatgtgtcattcctcctgatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38999203 |
tgaagagttatacattgccttatttctgcatcaatttttcctagccaaggtgaatttatacctggttttgatgcaggttcatgtgtcattcctcctgatg |
38999302 |
T |
|
| Q |
117 |
cggtactcttattcgacgtagagtttgtcagcaaagcatgatttacaactccatggcagtcgaattaccttccttgaacttccttg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38999303 |
cggtactcttattcgacgtagagtttgtcagcaaagcatgatttacaactccatggcagtcgaattaccttccttgaacttccttg |
38999388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 55981866 - 55981766
Alignment:
| Q |
83 |
tttgatgcaggttcatgtgtcattcctcctgatgcggtactcttattcgacgtagagtttgtcagcaaagcatgatttacaactccatggcagtcgaatt |
182 |
Q |
| |
|
||||||||||||| |||||||||| ||||| || ||||||||||||||| || |||||||| |||||| |||||||| | |||||||||||| |||| |
|
|
| T |
55981866 |
tttgatgcaggtttatgtgtcatttctccttatttggtactcttattcgatgtggagtttgttggcaaagtatgatttatatgtccatggcagtctaatt |
55981767 |
T |
|
| Q |
183 |
a |
183 |
Q |
| |
|
| |
|
|
| T |
55981766 |
a |
55981766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University