View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19424_low_3 (Length: 615)
Name: NF19424_low_3
Description: NF19424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19424_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 10 - 596
Target Start/End: Original strand, 33947936 - 33948522
Alignment:
| Q |
10 |
aagaatatactataattaatgatagcaaggaaaacaattggtagtctagtaaaggctgctccttctaaaaaccagtctagtccttcactcaaaagtcaat |
109 |
Q |
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| T |
33947936 |
aagaaaatactataattaatgatagcaaggaaaacaattggtagtctagtaaaggctgctccttctaaaaaccagtctagtccttcactcaaaagtcaat |
33948035 |
T |
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| Q |
110 |
ctttcccactcatacccccctctttcctctatccttccccacttcccttctctatataatcaccccttcacattccaaccgacacccattttccatttcc |
209 |
Q |
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| T |
33948036 |
ctttcccactcatacccccctctttcctctatccttccccacttcccttctctatataatcaccccttcacattccaaccgacacccattttccatttcc |
33948135 |
T |
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| Q |
210 |
accatagcaactgtttggtttggaatttggttccacaaacaagcatggaggttgttctaccagttgcaccacctactcctccaatagacttcaacttcga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33948136 |
accatagcaactgtttggtttggaatttggttccacaaacaaacatggaggttgttctaccagttgcaccacctactcctccagtagacttcaacttcga |
33948235 |
T |
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| Q |
310 |
cagtaactgttcctctccttacatcactgctccttcttcccctcaacgctttgccaacaacttcttcttcagtgctcctaccagcccctctcgtgtttca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33948236 |
cagtaactgttcctctccttacatcactgctccttcttcccctcaacgctttgccaacaacttcttcttcagtgctcctaccagcccctctcgtgtttca |
33948335 |
T |
|
| Q |
410 |
cctcttttctctgaatcctctcttccttttcatcaagaaaccaaactcaacaaccaccataacaactgcagttttggcaacgatgacgattttgagtttg |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33948336 |
cctcttttctctgaatcctctcttccttttcatcaagaaaccaaacccaacaaccaccataacaactacagttttggcaacgatgacgattttgagtttg |
33948435 |
T |
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| Q |
510 |
atttcagtggcaacctccaaaaagagtctctttccgccgccgatgaactctttgacggtggaaagatccgtcccatgaaacccttgc |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33948436 |
atttcagtggcaacctccaaaaagagtctctttccgccgccgatgaactctttgacggtggaaagatccgtcccatgaaaccgttgc |
33948522 |
T |
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