View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19424_low_6 (Length: 510)

Name: NF19424_low_6
Description: NF19424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19424_low_6
NF19424_low_6
[»] chr5 (1 HSPs)
chr5 (1-510)||(3743794-3744303)


Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 3743794 - 3744303
Alignment:
Q  1 aaggatgctttgggtttgaaagcatggaagtatagacaaactcaacagattctccgtctccggcgccggttatggtgtcattgtgacgaccgagaatgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3743794 aaggatgctttgggtttgaaagcatggaagtatagacaaactcaacagattctccgtctccggcgccggttatggtgtcattgtgacgaccgagaatgag 3743893  T
Q  101 tggactcggtcgccggagtctgtcaccgtcgaaagagtgagaaactaaacaataagaaaaacgattacccaaatgaggtgagagagtagagagctgtgcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3743894 tggactcggtcgccggagtctgtcaccgtcgaaagagtgagaaactaaacaataagaaaaacgattacccaaatgaggtgagagagtagagagctgtgcc 3743993  T
Q  201 ggaagagataaaattccgcggccaaaaccagctacgccggtgggttcagcgagtgcagtatgagcacaaccaaacgtgaaattctgaagatgaagagtag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||| ||    
T  3743994 ggaagagataaaattccgcggccaaaaccagctacgccggtgggttcagcaagtgcagtatgagcacaaccaaacgtgaagttttgaagatgaagagaag 3744093  T
Q  301 agatagacagtgtttgttggtagagattagcgacgaagcttccatcaccataagcgtagtaaaaaggtggacaagaaaaagaagaacaatcagaagtttc 400  Q
    ||| ||| ||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3744094 agagagaaagtgtttgttgatacagattagctacgaagcttccatcaccataagcatagtaaaaaggtggacaagaaaaagaagaacaatcagaagtttc 3744193  T
Q  401 gatgaaatctaaaggacaacgtgaaatagcacaaaggttactagaagacatggatgcatgcgctgcggaacatgcaggggattgacaagaaacagagtgt 500  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3744194 gatgtaatctaaaggacaacgtgaaatagcacaaaggttactagaagacatggatgcatgcgctgcggaacatgcaggggattgacaagaaacagagtgt 3744293  T
Q  501 gtttgttttg 510  Q
    ||||||||||    
T  3744294 gtttgttttg 3744303  T

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