View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_high_12 (Length: 503)
Name: NF19425_high_12
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Original strand, 43117772 - 43118260
Alignment:
| Q |
1 |
tcttcagagaaaatctcatgtaacaaaactacgagaataaaatgtcattgttaacccatacgagaaattagaagaaaatggtnnnnnnnttggtattaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43117772 |
tcttcagagaaaatctcatgtaacaaaactacgataataaaatgtcattgttaacccatacgagaaattagaagaaaatggttaaaaagttggtattaac |
43117871 |
T |
|
| Q |
101 |
attgcattatatatcacgggttgaaaaatttgatgcaatgatttctcatgttttcaaaggtgaatatttttcaatggagatgttcgggtgaatgaattga |
200 |
Q |
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| T |
43117872 |
attgcattatatatcacgggtcgaaaaatttgatgcaatgatttctcatgttttcaaaggtgaatatttttcaatggagatgttcgggtgaatgaattga |
43117971 |
T |
|
| Q |
201 |
gtataatataaattatacatgggttt------taagtgaatgaagaattatatgtttccatttgttgttaactcnnnnnnnnnnnnnnnnnnnnnnnaat |
294 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
43117972 |
gtataatataaattatacatgggttttaggactaagtgaatgaagaat--tatgtttccatttgttgttaactcattttttattttattttatttataat |
43118069 |
T |
|
| Q |
295 |
attggccgagccacaaccttatatattgttataacagagggtataaacatcatcaaaatttcatcatacacattctaatacttgggatatagcaattcaa |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43118070 |
attggccgagccacaaccttatatattgttataacagagggtataaacatcatcaaaatttcatcatacacattctaatacttgggatatagcaattcaa |
43118169 |
T |
|
| Q |
395 |
agggtaaaataaaaatcattttttaatagatagataaaatgacaatagtcatttgagaactcacatgcataagtagaggagtcgaagttca |
485 |
Q |
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| T |
43118170 |
agggtaaaataaaaatcattttttaatagatagataaaataacaatagtcatttgagaactcatatgcataagtagaggagtcgaagttca |
43118260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 421 - 451
Target Start/End: Complemental strand, 6263135 - 6263105
Alignment:
| Q |
421 |
tagatagataaaatgacaatagtcatttgag |
451 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
6263135 |
tagatagataaaatgacaatagtcatttgag |
6263105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 9412358 - 9412399
Alignment:
| Q |
414 |
tttttaatagatagataaaatgacaatagtcatttgagaact |
455 |
Q |
| |
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| T |
9412358 |
ttttttataaataaataaaatgacaatagtcatttgagaact |
9412399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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