View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_high_2 (Length: 816)
Name: NF19425_high_2
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 18107731 - 18108047
Alignment:
| Q |
1 |
tatgaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttgcaacagtgcaagtttggtaactctttaggtatgctgctg |
100 |
Q |
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| T |
18107731 |
tatgaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttggaacagtgcaagtttggtaactctttaggtatgct---g |
18107827 |
T |
|
| Q |
101 |
attttgtattctagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatgtttctttggctttgttcttttatcatgttttgaggtt |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18107828 |
attttgtatactagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatttttctttggctttgttcttttatcatgttttgaggtt |
18107927 |
T |
|
| Q |
201 |
tggtctttgtgagcaaacctattccaaatacacacacttagagactgaatgcatgaatagtcagaatatttacgatcatgagtttatccaatcctaccgt |
300 |
Q |
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| T |
18107928 |
tggtctttgtgagcagacctattccaaatacacacacttagagactgaatgcatgaatagtcagaatatttacgatcatgagtttatccaatcctaccgt |
18108027 |
T |
|
| Q |
301 |
caaaccatgagacgaaaaca |
320 |
Q |
| |
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|||||||||||||||||||| |
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| T |
18108028 |
caaaccatgagacgaaaaca |
18108047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 592 - 801
Target Start/End: Original strand, 18108953 - 18109162
Alignment:
| Q |
592 |
aaaacttacaaaaatatatctaactacgaacatttgggaaaaatatgaataaccatgcatttgggtaaaacaaagaacaattactttcttgggcaaatta |
691 |
Q |
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| T |
18108953 |
aaaacttacaaaaatatatctaactacaaacatttgggaaaaatatgaataaccatgcatttgggtaaaacaaagaacaattactttcttgggcaaatta |
18109052 |
T |
|
| Q |
692 |
agaagttataccttatatgattctagctaagcaaggaaaagggaatacccaacctagttgcatcaaaaaaccaaaatatacaataaagaataatctccat |
791 |
Q |
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| T |
18109053 |
agaagttataccttatatgattctagctaagcaaggaaaagggaatacccaacctagttgcatcaaaaaaccaaaatatataataaagaataatctccat |
18109152 |
T |
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| Q |
792 |
gacaagaaaa |
801 |
Q |
| |
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|||||||||| |
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| T |
18109153 |
gacaagaaaa |
18109162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 5 - 329
Target Start/End: Complemental strand, 18138247 - 18137930
Alignment:
| Q |
5 |
aaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttgcaacagtgcaagtttggtaactctttaggtatgctgctgattt |
104 |
Q |
| |
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||||||||||||||||||||||| || |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||| ||| ||| |||| |
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| T |
18138247 |
aaatataaatgcagaaattgaaatttcagaaggtaggtatgaatgtactatagtttggaacagtgcaagttaggtaactctttagatatcctg---attt |
18138151 |
T |
|
| Q |
105 |
tgtattctagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatgtttctttggctttgttcttttatcatgttttgaggtttggt |
204 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| |
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| T |
18138150 |
tgtatactagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatttttctttggcttcgttcttttatcatgttttgagg-ttggt |
18138052 |
T |
|
| Q |
205 |
ctttgtgag-caaacctattccaaatacacacacttagagactgaatgcatgaatagtcagaatatttacgatcatgagtttatccaatcctaccgtcaa |
303 |
Q |
| |
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||||||||| ||||||||||||||| ||||||||||||| |||||| |||||| || || |||||| |||||||||||||||||||||||| |||| |
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| T |
18138051 |
ctttgtgagaaaaacctattccaaat--acacacttagagattgaatgtatgaattgt--gagtatttattatcatgagtttatccaatcctaccatcaa |
18137956 |
T |
|
| Q |
304 |
accatgagacgaaaacaacaaatgta |
329 |
Q |
| |
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||||||| | ||||||||||||||| |
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| T |
18137955 |
accatgaccctaaaacaacaaatgta |
18137930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 366 - 512
Target Start/End: Original strand, 18083715 - 18083861
Alignment:
| Q |
366 |
gaagcacatttcatacaaagttagctatggaaaaccactaatgtcattaaagatttacaattgagtttatttataaactactaactgagaaattttgaac |
465 |
Q |
| |
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||||||||||| ||||||||| |||||||||||||||| ||||||||||| || |||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
18083715 |
gaagcacatttgatacaaagtaagctatggaaaaccacaaatgtcattaatgacttacaattgagtttatttataacatactaactgagaagttttgaac |
18083814 |
T |
|
| Q |
466 |
ttaaaatccatctcatgtaagctgaagatttaaccatatatgtcaat |
512 |
Q |
| |
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||||||||||| || || |||| ||||||||||||||||||||||| |
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| T |
18083815 |
ttaaaatccatgtcgtgaaagccaaagatttaaccatatatgtcaat |
18083861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 18098212 - 18098397
Alignment:
| Q |
4 |
gaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttgcaacagtgcaagtttggtaactctttaggtatgctgctgatt |
103 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||| | ||||||||||| ||| | |||||| |
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| T |
18098212 |
gaaatatcaatgcagaaattgaaaatttagaaggtaggtatcaatgtactatagtttggaacagtaaaagttagataactctttag--atg-tcctgatt |
18098308 |
T |
|
| Q |
104 |
ttgtattctagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatgtttctttggctttgttcttttatcatgttttgaggtt |
200 |
Q |
| |
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|| || |||||||||||||| || ||||||||||||||||| ||||||| ||||||||| |||||||||||||||||| |||||||||||| |
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| T |
18098309 |
ttata-----gtaacatcttcccaggtcgggtttggtgaatccaagttctgat---aatgtttctatggctttgttcttttatcctgttttgaggtt |
18098397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 342 - 508
Target Start/End: Original strand, 18099162 - 18099325
Alignment:
| Q |
342 |
tttaagaagaaaatttagataactg-aagcacatttcatacaaagttagctatggaaaaccactaatgtcattaaagatttacaattgagtttatttata |
440 |
Q |
| |
|
||||| |||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| ||||||||||| || ||||||| || |||||| |
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| T |
18099162 |
tttaaaaagaaaatttagatcactggaagcacatttcatacaaagtaagctatggaaaaccacaaatgtcattaatgacttacaatcaag----tttata |
18099257 |
T |
|
| Q |
441 |
aactactaactgagaaattttgaacttaaaatccatctcatgtaagctgaagatttaaccatatatgt |
508 |
Q |
| |
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| |||||||||||| |||| |||||||||||||| | || |||| ||||||||||||||||||| |
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| T |
18099258 |
acacactaactgagaagtttttaacttaaaatccatgttgtgaaagccaaagatttaaccatatatgt |
18099325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 15951824 - 15951715
Alignment:
| Q |
139 |
gtgaatccaatttctgatgttaatgtttctttggctttgttcttttatcatgttttgaggtttggtctttgtgagc-aaacctattccaaatacacacac |
237 |
Q |
| |
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|||||||||||||||||||||| | |||||| ||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| |||||| |
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| T |
15951824 |
gtgaatccaatttctgatgttatt-tttcttcggcttcgttcttttatcatgtttaaagg-ttggtctttgtgagcaaaacctattccaaat--acacac |
15951729 |
T |
|
| Q |
238 |
ttagagactgaatg |
251 |
Q |
| |
|
||||||| |||||| |
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| T |
15951728 |
ttagagattgaatg |
15951715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 490 - 538
Target Start/End: Original strand, 18108835 - 18108883
Alignment:
| Q |
490 |
aagatttaaccatatatgtcaatgatcactgttggtccttaatgctaac |
538 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18108835 |
aagatttaaccatatatgtcaatgatcactgttggtccttaatgctaac |
18108883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 11547683 - 11547626
Alignment:
| Q |
4 |
gaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttg |
61 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| |
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|
| T |
11547683 |
gaaatataaatgcagaaattggaaatttagaaggtatgtatcaatgtactatagtttg |
11547626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 200
Target Start/End: Original strand, 18082978 - 18083074
Alignment:
| Q |
101 |
attttgtattctagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatgtttctttggctttgttcttttatcatgttttgaggtt |
200 |
Q |
| |
|
||||||||| ||| |||||||||||| || |||||||||||||||| |||||| ||||||||| |||||||||||||||| | |||||||||||| |
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| T |
18082978 |
attttgtatattaggaacatcttcccaggtcaggtttggtgaatccaagctctgat---aatgtttctatggctttgttcttttaacttgttttgaggtt |
18083074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 18082917 - 18082957
Alignment:
| Q |
4 |
gaaatataaatgcagaaattgaaaatttagaaggtaggtat |
44 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18082917 |
gaaatatcaatgcagaaattgaaaatttagaaggtaggtat |
18082957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 11552442 - 11552387
Alignment:
| Q |
6 |
aatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttg |
61 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| |||| ||||||||||||||| |
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|
| T |
11552442 |
aatataaatgcagaaattggaaatttaaaaggtacgtatcaatgtactatagtttg |
11552387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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