View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_high_21 (Length: 466)
Name: NF19425_high_21
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 9 - 447
Target Start/End: Original strand, 35520901 - 35521338
Alignment:
| Q |
9 |
gaagaatatgggcatataagggtgaatgcttgtgaaaacaaaaagaaattagtagagtatgatggaagtctctatgtggttgacctgtatattaatgatg |
108 |
Q |
| |
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|||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35520901 |
gaagaaaatgggcatataagggtgaatgcttgcgaaaacaagaagaaattagtagagtatgatggaagtctctatgtggttgacctgtatattaatgatg |
35521000 |
T |
|
| Q |
109 |
aaagatattacaaatggggttactatttgaaggatgtttttgtggaagtttataagcttgatcaagaatggggtaaatggttaaaagtaaaagatttggg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35521001 |
aaagatattacaaatggggttactatttgaaggatgtttttgtggaagtttataagcttgatcaagaatggggtaaatggttaaaagtaaaagatttggg |
35521100 |
T |
|
| Q |
209 |
tgatgtttcatttgttttgagtaaagactcaaactttgcattgttagctcaagattattatggatttgaaggaaattgcatctatttctattttgatcac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35521101 |
tgatgtttcatttgttttgagtaaagactcaaactttgcattgttagctcaagattattatggatttgaaggaaattgcatctatttctattttgatcac |
35521200 |
T |
|
| Q |
309 |
aaggcttcttgtttcaacttgaagaatttagagactaaggttgctgacannnnnnnggccttgtccaactttgttccatcctgtgaccaattaatttgta |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35521201 |
aaggcttcttgtttcaacttgaagaatttagagactaaggttgctgaca-ttttttggccttgtccaactttgttccatcctgtgaccaattaatttgta |
35521299 |
T |
|
| Q |
409 |
agtatagtaatgcacataaatatgatacatggttttagt |
447 |
Q |
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| T |
35521300 |
agtatagtaatgcacataaatatgatacatggttttagt |
35521338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 289
Target Start/End: Complemental strand, 9514823 - 9514737
Alignment:
| Q |
203 |
tttgggtgatgtttcatttgttttgagtaaagactcaaactttgcattgttagctcaagattattatggatttgaaggaaattgcat |
289 |
Q |
| |
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|||||||||| ||| ||| ||||| ||||||||||||||||| |||| | | || ||||||| ||||||||||| |||||||||| |
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| T |
9514823 |
tttgggtgattattcgtttcttttgggtaaagactcaaacttttcattatcaactaaagattaccatggatttgaaagaaattgcat |
9514737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 183; Significance: 8e-99; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 19 - 431
Target Start/End: Complemental strand, 38813454 - 38813043
Alignment:
| Q |
19 |
ggcatataagggtgaatgcttgtgaaaacaaaaagaaattagtagagtatgatggaagtctctatgtggttgacctgtatattaatgatgaaagatatta |
118 |
Q |
| |
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||||||||||||||||| || |||||| ||| |||||||||||||||||||| |||| ||||||||||| | ||||| ||||||||||| ||||| |
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| T |
38813454 |
ggcatataagggtgaattctaacataaacaagaagcaattagtagagtatgatggaggtctatatgtggttgatttatatatcaatgatgaaaggtatta |
38813355 |
T |
|
| Q |
119 |
caaatggggttactatttgaaggatgtttttgtggaagtttataagcttgatcaagaatggggtaaatggttaaaagtaaaagatttgggtgatgtttca |
218 |
Q |
| |
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|||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38813354 |
caaaaggggttacttcttgaaggccgtttttgtggaagtttataagcttgatcaagaatggggtaaatggttaaaagtaaaagatttgggtgatgtttcg |
38813255 |
T |
|
| Q |
219 |
tttgttttgagtaaagactcaaactttgcattgttagctcaagattattatggatttgaaggaaattgcatctatttctattttgatcacaaggcttctt |
318 |
Q |
| |
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||||||||| ||||||| |||| ||||||||||| |||| |||||| ||||| | ||||| ||| |||||||| ||||||| ||| || ||| |||| |
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| T |
38813254 |
tttgttttggataaagacacaaattttgcattgttggctcgagattactatgggtgtgaagaaaactgcatctacttctattatgaaagcagggcatctt |
38813155 |
T |
|
| Q |
319 |
gtttcaacttgaagaatttagagactaaggttgctgacannnnnnnggccttgtccaactttgttccatcctgtgaccaattaatttgtaagtatagtaa |
418 |
Q |
| |
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||||||||||||||| ||||||| |||| |||||||| || | ||||||||||||||||||| |||| ||||||||||||||||||| | | |
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| T |
38813154 |
gtttcaacttgaagagtttagagtctaaacctgctgaca-aattttggattggtccaactttgttccatccagtgatcaattaatttgtaagtataatta |
38813056 |
T |
|
| Q |
419 |
tgcacataaatat |
431 |
Q |
| |
|
||||||||||||| |
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|
| T |
38813055 |
tgcacataaatat |
38813043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 55 - 288
Target Start/End: Complemental strand, 38825319 - 38825084
Alignment:
| Q |
55 |
aattagtagagtatgatggaagtctctatgtggttgacctgtatattaatgatgaaagatattacaaatggggttactatttgaaggatgtttttgtgga |
154 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||||||| |||||||| | |||||||| | |||||||| |||| ||| ||||||| | || |||| | |
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| T |
38825319 |
aattagtagagtttgatggaaatctctgtgtggttgatatgtatattgacgatgaaaggttttacaaattgggtcacttcttgaaggctattcgtgtgaa |
38825220 |
T |
|
| Q |
155 |
agtttataagcttgatcaagaatggggtaaatggttaaaagtaaaagatttgggtg--atgtttcatttgttttgagtaaagactcaaactttgcattgt |
252 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
38825219 |
agtatataagcttgatcaagaatggggtaaatggttatatgtaaaagatttgggtgatatgtttcgtttgttttgggtaaagactcaaactttgcattgt |
38825120 |
T |
|
| Q |
253 |
tagctcaagattattatggatttgaaggaaattgca |
288 |
Q |
| |
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| |||| ||||||||| |||| |||||||||||||| |
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| T |
38825119 |
tggctcgagattattacggatgtgaaggaaattgca |
38825084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 38810737 - 38810664
Alignment:
| Q |
51 |
aagaaattagtagagtatgatggaagtctctatgtggttgacctgtatattaatgatgaaagatattacaaatg |
124 |
Q |
| |
|
||||||||||||||||| ||| |||||| ||||||||||| ||||||||||||||||||| ||||| ||||| |
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| T |
38810737 |
aagaaattagtagagtacaatgaaagtctttatgtggttgatttgtatattaatgatgaaaggtattaaaaatg |
38810664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 57 - 289
Target Start/End: Complemental strand, 35548704 - 35548475
Alignment:
| Q |
57 |
ttagtagagtatgatggaagtctctatgtggttgacctgtatattaatgatgaaagatattacaaatggggttactatttgaaggatgtttttgtggaag |
156 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||| |||||||||||||| |||| ||| | || | || | | |||| |||||||||| || |
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|
| T |
35548704 |
ttagtagaatatgatggaaatctctatgtggttgatttgtatattaatgataaaagctatcataa---gcaatatttatacaaggttgtttttgtgaaaa |
35548608 |
T |
|
| Q |
157 |
tttataagcttgatcaagaatggggtaaatggttaaaagtaaaagatttgggtgatgtttcatttgttttgagtaaagactcaaactttgcattgttagc |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | || |||| ||||||| | || ||||||||| ||| ||||||||||||| ||||| |||| |
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| T |
35548607 |
tttataagcttgatcaagaatggggtaaatggtttgatgtgccagatctgggtgaagctttgtttgttttgggtagagactcaaacttttcattgatagc |
35548508 |
T |
|
| Q |
257 |
tcaagattattatggatttgaaggaaattgcat |
289 |
Q |
| |
|
|||||| |||||||||| | || |||||||||| |
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|
| T |
35548507 |
tcaagactattatggatgtcaaagaaattgcat |
35548475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 34864671 - 34864593
Alignment:
| Q |
219 |
tttgttttgagtaaagactcaaactttgcattgttagctcaagattattatggatttgaaggaaattgcatctatttct |
297 |
Q |
| |
|
||||||||| ||||||||| ||||||| |||||| ||| | |||||||||||||||||| |||| |||||||| |||| |
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| T |
34864671 |
tttgttttgggtaaagacttaaacttttcattgtctgctaatgattattatggatttgaaagaaactgcatctacttct |
34864593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 34145953 - 34146011
Alignment:
| Q |
231 |
aaagactcaaactttgcattgttagctcaagattattatggatttgaaggaaattgcat |
289 |
Q |
| |
|
||||||||||||||| |||| | |||| |||| ||||||||||||||| |||||||||| |
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|
| T |
34145953 |
aaagactcaaacttttcattatcagctaaagactattatggatttgaaagaaattgcat |
34146011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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