View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19425_high_25 (Length: 431)

Name: NF19425_high_25
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19425_high_25
NF19425_high_25
[»] chr3 (2 HSPs)
chr3 (4-413)||(4149552-4149961)
chr3 (4-413)||(4165324-4165733)
[»] chr6 (4 HSPs)
chr6 (18-120)||(7115543-7115645)
chr6 (18-120)||(7120615-7120717)
chr6 (18-120)||(7124019-7124121)
chr6 (28-119)||(8656649-8656740)
[»] chr7 (1 HSPs)
chr7 (4-119)||(32413589-32413704)
[»] chr5 (2 HSPs)
chr5 (72-118)||(19658349-19658395)
chr5 (72-118)||(19675188-19675234)
[»] scaffold0896 (2 HSPs)
scaffold0896 (55-120)||(2256-2321)
scaffold0896 (55-119)||(1473-1537)


Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 4 - 413
Target Start/End: Original strand, 4149552 - 4149961
Alignment:
Q  4 aagacagaatcagagatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatg 103  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||    
T  4149552 aagacagaatcagtgatttaccgaattgtgtgttacttctcatactgtcgattttgaacaccaaagaggccgttcaaacctgcgttttgtccacgagatg 4149651  T
Q  104 gaagaatctctggaagtatattcctgttctttcaataagttgttgccacttcgagactcggaagggtttcatcagattcgtgtctcaatttttgtatcta 203  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||    
T  4149652 gaagaatctctggaagtatattcctgttctttcaataagttcttgccacttcgagactcggatgggtttcaccatattcgtgtatcaatttttgtatcta 4149751  T
Q  204 cgtgataacaaaaccgcactgcacactctccatcttcaccgcgaaggtgtcatctggcctcgccacctcaagtgggttataaaatatgcatttgaccacg 303  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| || ||||||| |||||||||||||| |||||||||||||    
T  4149752 cgtgataacaaaaccgcactgcacactctcgatcttcaccgcgatggtgtcatctggcctggctacctcaactgggttataaaatacgcatttgaccacg 4149851  T
Q  304 gtgtccagctattagatgtagattcgacctttaatcatcaacactatccacttccctgcgtttcatgtgacactttaacatctcttaccctttgtagaaa 403  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||    
T  4149852 gtgtccagctattagatgtagattcgaccttttattatcaacactatccacttccctacgtttcatgtcacactttaacatctcttaccctttgtacaaa 4149951  T
Q  404 cgatcaattt 413  Q
    | ||||||||    
T  4149952 caatcaattt 4149961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 4 - 413
Target Start/End: Original strand, 4165324 - 4165733
Alignment:
Q  4 aagacagaatcagagatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatg 103  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||    
T  4165324 aagacagaatcagtgatttaccgaattgtgtgttacttctcatactgtcgattttgaacaccaaagaggccgttcaaacctgcgttttgtccacgagatg 4165423  T
Q  104 gaagaatctctggaagtatattcctgttctttcaataagttgttgccacttcgagactcggaagggtttcatcagattcgtgtctcaatttttgtatcta 203  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||    
T  4165424 gaagaatctctggaagtatattcctgttctttcaataagttcttgccacttcgagactcggatgggtttcaccatattcgtgtatcaatttttgtatcta 4165523  T
Q  204 cgtgataacaaaaccgcactgcacactctccatcttcaccgcgaaggtgtcatctggcctcgccacctcaagtgggttataaaatatgcatttgaccacg 303  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| || |||||| ||||||||||||||| |||||||||||||    
T  4165524 cgtgataacaaaaccgcactgcacactctcgatcttcaccgcgatggtgtcatctggcctggctacctcatgtgggttataaaatacgcatttgaccacg 4165623  T
Q  304 gtgtccagctattagatgtagattcgacctttaatcatcaacactatccacttccctgcgtttcatgtgacactttaacatctcttaccctttgtagaaa 403  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||| |||    
T  4165624 gtgtccagctattagatgtagattcgaccttttattatcaacactatccacttccctacgttttatgtcacactttaacatctcttaccctttgtacaaa 4165723  T
Q  404 cgatcaattt 413  Q
    | ||||||||    
T  4165724 caatcaattt 4165733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 7115645 - 7115543
Alignment:
Q  18 gatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctgga 117  Q
    ||||||||  ||||||| ||||||| |||||| ||  |||||||||||||| | || |||||||| |||||| |||||   |||||||||||||||||||    
T  7115645 gatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctgga 7115546  T
Q  118 agt 120  Q
    |||    
T  7115545 agt 7115543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 7120717 - 7120615
Alignment:
Q  18 gatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctgga 117  Q
    ||||||||  ||||||| ||||||| |||||| ||  |||||||||||||| | || |||||||| |||||| |||||   |||||||||||||||||||    
T  7120717 gatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctgga 7120618  T
Q  118 agt 120  Q
    |||    
T  7120617 agt 7120615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 7124121 - 7124019
Alignment:
Q  18 gatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctgga 117  Q
    ||||||||  ||||||| ||||||| |||||| ||  |||||||||||||| | || |||||||| |||||| |||||   |||||||||||||||||||    
T  7124121 gatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctgga 7124022  T
Q  118 agt 120  Q
    |||    
T  7124021 agt 7124019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 8656740 - 8656649
Alignment:
Q  28 attgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaag 119  Q
    ||||||| ||||||| |||||| ||  |||||||||||||| | || |||||||| |||||| || ||   |||||||||||||||||||||    
T  8656740 attgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaag 8656649  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 32413589 - 32413704
Alignment:
Q  4 aagacagaatcagagatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatg 103  Q
    |||||||| |||| |||||| |  ||||||| ||||||| |||||| ||   ||||||||||||| | ||||||||||| ||  || ||||| | |||||    
T  32413589 aagacagactcagtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaagatg 32413688  T
Q  104 gaagaatctctggaag 119  Q
    ||||||||||||||||    
T  32413689 gaagaatctctggaag 32413704  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 19658395 - 19658349
Alignment:
Q  72 gccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaa 118  Q
    ||||||||||| |||||| ||||| ||||||||| ||||||||||||    
T  19658395 gccgttcaaacttgtgttttgtccacgagatggaggaatctctggaa 19658349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 19675234 - 19675188
Alignment:
Q  72 gccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaa 118  Q
    ||||||||||| |||||| ||||| ||||||||| ||||||||||||    
T  19675234 gccgttcaaacttgtgttttgtccacgagatggaggaatctctggaa 19675188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 2256 - 2321
Alignment:
Q  55 ttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaagt 120  Q
    |||||||||||||| | || |||||||| |||||| || ||   ||||||||||||||||||||||    
T  2256 ttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaagt 2321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 1473 - 1537
Alignment:
Q  55 ttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaag 119  Q
    |||||||||||||| | || |||||||| |||||| || ||   |||||||||||||||||||||    
T  1473 ttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaag 1537  T

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