View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_high_27 (Length: 407)
Name: NF19425_high_27
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 14748127 - 14747763
Alignment:
| Q |
1 |
aatcgtttcaatattcttggagaaatactcttatctattctccgctcaatcgtttcaatacttcggatttgattgccttgggcacctgagagacataaac |
100 |
Q |
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| T |
14748127 |
aatcgtttcaatattcttggagaaatactcttatctattctccgctcaatcgtttcaatacttcggatttgattgccttgggcacctgagagacataaac |
14748028 |
T |
|
| Q |
101 |
ttatcattcattcttattggaggtcttaacattatcatgagcacttaatgaatttggtagagtggaagtttcatgaataactgcattttcagaattataa |
200 |
Q |
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| T |
14748027 |
ttatcattcattcttattggaggtcttaacattatcatgagcacttaatgaatttggtagagtggaagtttcatgaataactgcattttcagaattataa |
14747928 |
T |
|
| Q |
201 |
tggaaaaccatatacnnnnnnnnagaagaaaagcataaacttcttcagttgagtggttatataacatgttaaacaacttaaaagttgacataagatagta |
300 |
Q |
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| T |
14747927 |
tggaaaaccatatacttttttttagaagaaaagcataaacttcttcagttgagtggttatataacatgttaaacaacttaaaagttgacataagatagta |
14747828 |
T |
|
| Q |
301 |
ggaagatactttcttacattcaactaatcagctatatcttcttattgattactaccctacttcat |
365 |
Q |
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| T |
14747827 |
ggaagatactttcttacattcaactaatcagctatatcttcttattgattactaccctacttcat |
14747763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 30298051 - 30298155
Alignment:
| Q |
239 |
acttcttcagttgagtggttatataacatgttaaacaacttaaaagttgacataagatagtaggaagatactttcttacattcaactaatcagctatatc |
338 |
Q |
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| T |
30298051 |
acttcttcagctgagtggttatgtaacatattaaacaacttaaaagctgaaataagataataggaagatactttcttacattcaactgatcagctatatt |
30298150 |
T |
|
| Q |
339 |
ttctt |
343 |
Q |
| |
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||||| |
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|
| T |
30298151 |
ttctt |
30298155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 30326918 - 30327022
Alignment:
| Q |
239 |
acttcttcagttgagtggttatataacatgttaaacaacttaaaagttgacataagatagtaggaagatactttcttacattcaactaatcagctatatc |
338 |
Q |
| |
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|||||||||| ||||||||||| |||||| |||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
30326918 |
acttcttcagctgagtggttatgtaacatattaaacaacttaaaagctgaaataagataataggaagatactttcttacattcaactgatcagctatatt |
30327017 |
T |
|
| Q |
339 |
ttctt |
343 |
Q |
| |
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||||| |
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|
| T |
30327018 |
ttctt |
30327022 |
T |
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