View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_high_33 (Length: 391)
Name: NF19425_high_33
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_high_33 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 14 - 391
Target Start/End: Complemental strand, 27854864 - 27854487
Alignment:
| Q |
14 |
gaacatcaattgtgatctttctccgtggtgttcatggaaaaatatagtgtgacaattacagctttgttaattacgtgccaaagtgatactctttaatatc |
113 |
Q |
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| T |
27854864 |
gaacatcaattgtgatctttctccgtggtgttcatggaaaaatatagtgtgacaattacagctttgttaattacgtgccaaagtgatactctttaatatc |
27854765 |
T |
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| Q |
114 |
gtggacctaaagnnnnnnnttccatcgaggtatatgccaagaacaatgggaaagttgnnnnnnncacatgtaattaatgcctctatgtttgtattgtgaa |
213 |
Q |
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| T |
27854764 |
gtggacctaaagaaaaaaattccatcgaggtatatgccaagaacaatgggaaagttgtttttttcacttgtaattaaagcctctatgtttgtattgtgaa |
27854665 |
T |
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| Q |
214 |
tgtggatgaggttttttatagcttaagctcgcacggaacactcaacttcaatcaatattaagcttttgtcttgctgtgtgatattttactgccctttcaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27854664 |
tgtggatgaggttttttatagcttaagctcgcacggaacactcaacttcaatcaatattaagcttttgtcttgctgtgtgatattttactgccctttcaa |
27854565 |
T |
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| Q |
314 |
ctaataattggcagtagtgatgtatttgaaatatggtgtattcatgtccacaagattaggtataatatcactacaaga |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27854564 |
ctaataattggcagtagtgatgtatttgaaatatggtgtattcatgtccacaagattaggtataatatcactacaaga |
27854487 |
T |
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