View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19425_high_41 (Length: 354)
Name: NF19425_high_41
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_high_41 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 333
Target Start/End: Original strand, 36146917 - 36147240
Alignment:
| Q |
10 |
attatactatgttatataaatgtaaaataaaataaatataagagaaaatgcaatatttctacatttctgcatacataatgaaaatatcaggagaaaatgt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36146917 |
attatactatgttatataaatgtaaaataaaataaatataagagaaaatgcaatatttctacatttctgcatacataatgaaaatatcaggagaaaatgt |
36147016 |
T |
|
| Q |
110 |
catattattatatactactattatatgtgtatgcaagtcttaagttttactatccgtaatatattatgattataatatatatgtacataaaatcacatta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36147017 |
catattattatatactactattatatgtgtatgcaagtcttaagttttactatccgtaatatattatgattataatatatatgtacataaaatcacatta |
36147116 |
T |
|
| Q |
210 |
ttattggcataaaaatcacatcattagaattagataattttggttacatgagtaaaaaggagtttatgtagatacacgtacaggttgttcnnnnnnngca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36147117 |
ttattggcataaaaatcacatcattagaattagataattttggttacatgagtaaaaaggagtttatgtagatacacgtacaggttgttctttttttgca |
36147216 |
T |
|
| Q |
310 |
atatatcgtagtcatgcttcagct |
333 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36147217 |
atatatcgtagtcatgcttcagct |
36147240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 325
Target Start/End: Original strand, 36080026 - 36080133
Alignment:
| Q |
220 |
aaaaatcacatcattagaattagataattttggttacatgagtaaaaagg--agtttatgtagatacacgtacaggttgttcnnnnnnngcaatatatcg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| | | ||| ||||||| ||||||||||| |
|
|
| T |
36080026 |
aaaaatcacatcattagaattagataattttggttacacgagtaaaaaaatcattttatgtagatagatgcacaagttgttcaatttttgcaatatatcg |
36080125 |
T |
|
| Q |
318 |
tagtcatg |
325 |
Q |
| |
|
|||||||| |
|
|
| T |
36080126 |
tagtcatg |
36080133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 36079865 - 36079916
Alignment:
| Q |
138 |
gtatgcaagtcttaagttttactatccgtaatatattatgattataatatat |
189 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
36079865 |
gtatgcaagtcttaagttttactatttgtcatatattatgattataatatat |
36079916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 119
Target Start/End: Original strand, 36075673 - 36075708
Alignment:
| Q |
84 |
ataatgaaaatatcaggagaaaatgtcatattatta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
36075673 |
ataatgaaaatatcaggagaaaatgtcatattatta |
36075708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 296
Target Start/End: Complemental strand, 26529875 - 26529738
Alignment:
| Q |
168 |
atatattatgattataatatatatgtacataaaatcacattattatt---------ggcataaaaa-tcacatcattagaattagataattttggttaca |
257 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
26529875 |
atatattatgattaaaatatat--gtacataaaatcacattattattcttttgaacggcataaaaaatcacatcattagaattatataattttggttaca |
26529778 |
T |
|
| Q |
258 |
tgagt-aaaaaggagtttatgtagatacacgtacaggttg |
296 |
Q |
| |
|
||||| |||||| | ||||| ||||||||| |||| |||| |
|
|
| T |
26529777 |
tgagtgaaaaagcattttatatagatacacatacaagttg |
26529738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 26530056 - 26529972
Alignment:
| Q |
22 |
tatataaatgtaaaataaaataaatataagagaaaatgcaatatttctacatttctgcatacataatgaaaatatcaggagaaaatgtcatatt |
115 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26530056 |
tatataaatgtcaa-taaaataaatataagagaaaatgcaatatttct--------gcatacataatgaaaatatcaggagaaaatgtcatatt |
26529972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University