View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_high_48 (Length: 319)
Name: NF19425_high_48
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_high_48 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 34984716 - 34984864
Alignment:
| Q |
18 |
atcttagtcagccaaatcaattcaaaactttaaggattaatgagatagaaatcacacgcgacccattttttagaaaaggtgaacattttcttccatataa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34984716 |
atcttagtcagccaaatcaattcaaaactttaaggattaatgagatagaaatcacacgccacccattttttagaaaaggtgaacattttcttccatataa |
34984815 |
T |
|
| Q |
118 |
ttgtaaaaatgtattggcaatatttctggttctgtcatcaaagtaaaac |
166 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34984816 |
ttgtaaaaatgtattggcaatatttctggttctgtcatcaaagtaaaac |
34984864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 202 - 319
Target Start/End: Original strand, 34984900 - 34985017
Alignment:
| Q |
202 |
gcctcactttacatttcttctggcatatgctttgtattttttgctattctacatcaatagttataaggtttttattgtgttgtgccctcaagaggttttt |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34984900 |
gcctcactttacatttcttctggcatatgctttgtattttttgctattctacatcaataattataaggtttttattgtgttgtgccctcaagaggttttt |
34984999 |
T |
|
| Q |
302 |
ggttggaatccttacatt |
319 |
Q |
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|||||||||||||||||| |
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| T |
34985000 |
ggttggaatccttacatt |
34985017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 202 - 319
Target Start/End: Original strand, 34977645 - 34977761
Alignment:
| Q |
202 |
gcctcactttacatttcttctggcatatgctttgtattttttgctattctacatcaatagttataaggtttttattgtgttgtgccctcaagaggttttt |
301 |
Q |
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| T |
34977645 |
gcctcactttacatttcttctggcatatgcttttt-ttttttgttattctacatcaataattataagatacttattgtgttgtgccctcaagaggttttt |
34977743 |
T |
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| Q |
302 |
ggttggaatccttacatt |
319 |
Q |
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||||||||||||| |||| |
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| T |
34977744 |
ggttggaatcctttcatt |
34977761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 202 - 318
Target Start/End: Original strand, 34991591 - 34991707
Alignment:
| Q |
202 |
gcctcactttacatttcttctggcatatgctttgtattttttgct-attctacatcaatagttataaggtttttattgtgttgtgccctcaagaggtttt |
300 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||| | ||||||||| |||| |||||||||||||||||||||||| |||||||| |||| |
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| T |
34991591 |
gcctcactttatttttcttctggcatattctttgtattttttttttattctacattaataattataaggtttttattgtgttgtg-cctcaagatttttt |
34991689 |
T |
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| Q |
301 |
tggttggaatccttacat |
318 |
Q |
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|||||||||||||||||| |
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| T |
34991690 |
tggttggaatccttacat |
34991707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 202 - 311
Target Start/End: Complemental strand, 2303713 - 2303601
Alignment:
| Q |
202 |
gcctcactttacatttcttctggcatatgctttgtattttttgctattctacatcaatagttataaggtttttattgtg---ttgtgccctcaagaggtt |
298 |
Q |
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|
||||||||||||||||| |||||||||||||||| |||||||| ||||||| ||||||| |||||||||||||| |||| ||||| || |||||||| |
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| T |
2303713 |
gcctcactttacatttcctctggcatatgctttgaattttttgttattctagatcaataattataaggtttttactgtgtgtttgtgtccaaaagaggtt |
2303614 |
T |
|
| Q |
299 |
tttggttggaatc |
311 |
Q |
| |
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||||||||||||| |
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| T |
2303613 |
tttggttggaatc |
2303601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 34977527 - 34977606
Alignment:
| Q |
89 |
agaaaaggtgaacattttcttccatat--aattgtaaaaatgtattggcaatatttctggttctgtcatcaaagtaaaac |
166 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
34977527 |
agaaaaggtgaacattttcttccatatctaattgtaaaaatgcattggcaatatttctggttctgttatcaaagtaaaac |
34977606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 34991391 - 34991498
Alignment:
| Q |
18 |
atcttagtcagccaaatcaattcaaaactttaaggattaatgagatagaaatcacacgcgacccattttttagaaaaggtgaacattttcttccatataa |
117 |
Q |
| |
|
|||||||| || |||||||| | |||||||||||| ||| ||||||||||||||| | | ||| | |||| |||||||||||||||||||||||| |
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| T |
34991391 |
atcttagtgaggaaaatcaatccgaaactttaaggactaaggagatagaaatcacaaaccatccaaatcggagaacaggtgaacattttcttccatataa |
34991490 |
T |
|
| Q |
118 |
ttgtaaaa |
125 |
Q |
| |
|
|||||||| |
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|
| T |
34991491 |
ttgtaaaa |
34991498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 34991522 - 34991554
Alignment:
| Q |
132 |
tggcaatatttctggttctgtcatcaaagtaaa |
164 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34991522 |
tggcaatatttctggttctgtcatcaaagtaaa |
34991554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 202 - 311
Target Start/End: Original strand, 40582225 - 40582337
Alignment:
| Q |
202 |
gcctcactttacatttcttctggcatatgctttgtatttttt---gctattctacatcaatagttataaggtttttattgtgttgtgccctcaagaggtt |
298 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||| | |||||||| |||||| ||||||||||| ||||||||||| ||||||||||||| |
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| T |
40582225 |
gcctcactttacatttcttctgccacatgctttgtatttttttttgttattctacgtcaataattataaggtttctattgtgttgtaccctcaagaggtt |
40582324 |
T |
|
| Q |
299 |
tttggttggaatc |
311 |
Q |
| |
|
||||||||||||| |
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| T |
40582325 |
tttggttggaatc |
40582337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 40582131 - 40582189
Alignment:
| Q |
108 |
ttccatataattgtaaaaatgtattggcaatatttctggttctgtcatcaaagtaaaac |
166 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
40582131 |
ttccatataattgtaaaaatatattggcaatatttctggttctgtcatcaaagcaaaac |
40582189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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