View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19425_high_5 (Length: 694)

Name: NF19425_high_5
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19425_high_5
NF19425_high_5
[»] chr7 (1 HSPs)
chr7 (18-683)||(30688384-30689051)


Alignment Details
Target: chr7 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 18 - 683
Target Start/End: Original strand, 30688384 - 30689051
Alignment:
Q  18 ctccaaagcaccgtcactatccttccttgcagctctataggccttcttagcttcctgctcaccttcactaccttctttccttaccatactattatacagc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30688384 ctccaaagcaccgtcactatccttccttgcagctctataggccttcttagcttcctgctcaccttcaccaccttctttccttaccatactattatacagc 30688483  T
Q  118 tccatctgcgcagttgtaggttagaactgattttgtatggagcaaaagttggg--catgatactcaggaggttaagaaaatatattactaggctgtgggc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  30688484 tccatctgcgcagttgtaggttagaactgattttgtatggagcaaaagctgggggcatgatactcaggaggttaagaaaatatattactaggctgtgggc 30688583  T
Q  216 tgggcttatcctcctacatagcagtatagttagcctactttatatgcgtagatacagatacaataagcccaatcagtcataatagacgctcttaaaaaac 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30688584 tgggcttatcctcctacatagcagtatagttagcctactttatatgtgtagatacagatacaataagcccaatcagtcataatagacgctcttaaaaaac 30688683  T
Q  316 tagaaactgacatttgagtttcaagactttgaatcactgtaacgtattctctacatccttagagacgtatcaattctacagtctacgtacctccttttta 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  30688684 tagaaactgacatttgagtttcaagactttgaatcactgtaacgtattctctacatccttagagacagatcaattctacagtctacgtacctccttttta 30688783  T
Q  416 acaagcctcagaaactcttcacgttctttgctcaccgactgaaaagtcataagacaaatcattgcgtccaatcatttaccaaaaaatattaatagttgga 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30688784 acaagcctcagaaactcttcacgttctttgctcaccgactgaaaagtcataagacaaatcattgcgtccaatcatttaccaaaaaatattaatagttgga 30688883  T
Q  516 aagagtgaaataagttttccttacagattttgatgctaaaacagctaatgcttggctgatctcacaaagttgctcatgtttttccaatgccgttgccttt 615  Q
    |||||| |||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30688884 aagagtaaaataagttttccttacagatgctgatgctaaaacaactaatgcttggctgatctcacaaagttgctcatgtttttccaatgcctttgccttt 30688983  T
Q  616 atctcttctcgtgtttgttcggtcgttggagcaacctcttttgtagccaaattcctttcgccacctat 683  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30688984 atctcttctcgtgtttgttcggtcgttggagccacctcttttgtagccaaattcctttcgccacctat 30689051  T

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