View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_high_55 (Length: 294)
Name: NF19425_high_55
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_high_55 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 13023488 - 13023717
Alignment:
| Q |
16 |
atccaaggcggatatcacgtgatacatcatcataataataaatcatgaacttattgaaataatataactcata-ttttttaacttcactctttattagcc |
114 |
Q |
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| T |
13023488 |
atccaaggcgaatatcacgtgatacatcat---aataataaatcatgaacttattgaaataatataactcataattttttaacttcactctttattagcc |
13023584 |
T |
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| Q |
115 |
aaattcattaattaataagtaataaaattgaggtaaaaatatactttgtagattcggttatctaaagtgaacaactaactgtaaactaaatattatcaat |
214 |
Q |
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| T |
13023585 |
aaattcattaattaataagtaataaaattgaggtaaaaatatactttgtagattcggttatctaaagtgaacaactaactgtaaactaaatattatcaat |
13023684 |
T |
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| Q |
215 |
cattgattaaattattaggataaatactaaaca |
247 |
Q |
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| T |
13023685 |
cattgattaaattattaggataaatactaaaca |
13023717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 261 - 294
Target Start/End: Original strand, 13023704 - 13023737
Alignment:
| Q |
261 |
ataaatactaaacatatatcataataaattatga |
294 |
Q |
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| T |
13023704 |
ataaatactaaacatatatcataataaattatga |
13023737 |
T |
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