View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19425_high_56 (Length: 293)

Name: NF19425_high_56
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19425_high_56
NF19425_high_56
[»] chr7 (4 HSPs)
chr7 (19-288)||(14747215-14747484)
chr7 (19-288)||(38076192-38076461)
chr7 (47-95)||(23887338-23887386)
chr7 (47-95)||(23898514-23898562)
[»] chr8 (5 HSPs)
chr8 (19-288)||(29721720-29721989)
chr8 (47-173)||(12340744-12340870)
chr8 (77-162)||(36024708-36024793)
chr8 (69-103)||(35029468-35029502)
chr8 (47-88)||(3939468-3939509)
[»] chr6 (4 HSPs)
chr6 (19-288)||(32363129-32363398)
chr6 (29-165)||(13563754-13563890)
chr6 (26-164)||(8384451-8384589)
chr6 (81-164)||(17251909-17251992)
[»] chr3 (8 HSPs)
chr3 (29-288)||(38355513-38355769)
chr3 (88-278)||(52194486-52194676)
chr3 (22-278)||(55366681-55366937)
chr3 (19-165)||(18381242-18381388)
chr3 (48-173)||(46189670-46189794)
chr3 (29-161)||(2427100-2427232)
chr3 (38-88)||(31921179-31921229)
chr3 (47-88)||(31675191-31675232)
[»] chr2 (3 HSPs)
chr2 (19-268)||(3704810-3705059)
chr2 (29-189)||(39073303-39073463)
chr2 (69-165)||(13352788-13352884)
[»] chr4 (5 HSPs)
chr4 (68-162)||(18734740-18734834)
chr4 (48-173)||(56337337-56337462)
chr4 (29-172)||(36182714-36182857)
chr4 (77-162)||(41382160-41382245)
chr4 (69-159)||(9690613-9690703)
[»] chr1 (5 HSPs)
chr1 (60-162)||(38070020-38070122)
chr1 (93-186)||(22566223-22566316)
chr1 (38-88)||(3544930-3544980)
chr1 (29-88)||(40563378-40563437)
chr1 (38-95)||(1248414-1248471)
[»] scaffold0043 (1 HSPs)
scaffold0043 (29-88)||(34429-34488)
[»] scaffold0555 (1 HSPs)
scaffold0555 (38-88)||(7929-7979)
[»] chr5 (2 HSPs)
chr5 (38-88)||(476474-476524)
chr5 (69-115)||(23923083-23923129)
[»] scaffold0189 (1 HSPs)
scaffold0189 (47-88)||(6349-6390)


Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 14747484 - 14747215
Alignment:
Q  19 catgcggggctgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14747484 catgcggggctgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaat 14747385  T
Q  119 acttttattgtgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctatacagtaagcaatgcgtacaagaacttaacgtttc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14747384 acttttattgtgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctatacagtaagcaatgcgtacaagaacttaacgtttc 14747285  T
Q  219 aggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtatgttcctttgatgatgtccat 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  14747284 aggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtatgttcctttgaaggtgtccat 14747215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 38076192 - 38076461
Alignment:
Q  19 catgcggggctgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaat 118  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38076192 catgcgtggctgggaggtaggaggtgatgcgtggagctggaggagaccgttgtgggtgtgggaggaggagatgttaggcgagtgttgcctgttacttaat 38076291  T
Q  119 acttttattgtgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctatacagtaagcaatgcgtacaagaacttaacgtttc 218  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||||||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||    
T  38076292 acttttattatgcatactgatgtttcttacagttggcagtggctcccggacattgtgggatgctataccgtaagcaatgcgtataagaacttaacgtttc 38076391  T
Q  219 aggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtatgttcctttgatgatgtccat 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| | |||||||    
T  38076392 aggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtatgtccctctgaaggtgtccat 38076461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 23887386 - 23887338
Alignment:
Q  47 gcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttag 95  Q
    |||||||| |||||||||   ||||||||||||||||| ||||||||||    
T  23887386 gcgtggaggtggaggagaagactgtgggtgtgggaggaagagatgttag 23887338  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 23898562 - 23898514
Alignment:
Q  47 gcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttag 95  Q
    |||||||| |||||||||   ||||||||||||||||| ||||||||||    
T  23898562 gcgtggaggtggaggagaagactgtgggtgtgggaggaagagatgttag 23898514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 29721720 - 29721989
Alignment:
Q  19 catgcggggctgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaat 118  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29721720 catgcgtggctgggaggtaggaggtgatgcgtggagctggaggagaccattgtgggtgtgggaggaggagatgttaggcgagtgttgcatgttacttaat 29721819  T
Q  119 acttttattgtgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctatacagtaagcaatgcgtacaagaacttaacgtttc 218  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29721820 acttttattgtgcatactgatgtttctgacaggtggcagtggctcccgaacattgggggaggctatacagtaagcaatgcgtataagaacttaacgtttc 29721919  T
Q  219 aggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtatgttcctttgatgatgtccat 288  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  29721920 aggctgcccctttgattaacgtgacagatgatctcgtttggcacaagtatgttcctttgaaggtgtccat 29721989  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 47 - 173
Target Start/End: Complemental strand, 12340870 - 12340744
Alignment:
Q  47 gcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctg 146  Q
    |||||||| |||||||||    |||||| ||||||||||||| | ||||| |||||| ||   |||||||||| |||| || |||| ||||||| |||||    
T  12340870 gcgtggagatggaggagaaggttgtgggagtgggaggaggagttattaggggagtgtcgccatttacttaataattttgttttgcagactgatgcttctg 12340771  T
Q  147 acagctggcagtggctcccggacattg 173  Q
    |||| |||||||||||||| |||||||    
T  12340770 acaggtggcagtggctccctgacattg 12340744  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 162
Target Start/End: Complemental strand, 36024793 - 36024708
Alignment:
Q  77 tgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctgacagctggcagtggct 162  Q
    ||||||||| ||||| ||||| ||||| ||   |||||| ||| |||| ||||||| ||||||||||||||||| |||||||||||    
T  36024793 tgggaggagaagatgataggcaagtgtcgccgtttacttcataattttgttgtgcagactgatgtttctgacaggtggcagtggct 36024708  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 35029502 - 35029468
Alignment:
Q  69 tgtgggtgtgggaggaggagatgttaggcgagtgt 103  Q
    |||||||||||||||||||||||||||| ||||||    
T  35029502 tgtgggtgtgggaggaggagatgttaggggagtgt 35029468  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 3939509 - 3939468
Alignment:
Q  47 gcgtggagctggaggagacctctgtgggtgtgggaggaggag 88  Q
    ||||||| ||||||||||||| |||| |||||||||||||||    
T  3939509 gcgtggaactggaggagacctttgtgagtgtgggaggaggag 3939468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 32363398 - 32363129
Alignment:
Q  19 catgcggggctgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaat 118  Q
    |||||| | ||||||||||||||||| ||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32363398 catgcgtgactgggaggtaggaggtgatgcatggagctggaggagaccgttgtgggtgtgggaggaggagatgttaggcgagtgttgcctgttacttaat 32363299  T
Q  119 acttttattgtgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctatacagtaagcaatgcgtacaagaacttaacgtttc 218  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||    
T  32363298 acttttattatgcatactgatgtttctgacaggtggcagtggctcccggacattgagggaggctataccgtaagcaatgcgtataagaacttaacgtttc 32363199  T
Q  219 aggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtatgttcctttgatgatgtccat 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| | |||||||    
T  32363198 aggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtatgtccctctgaaggtgtccat 32363129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 165
Target Start/End: Original strand, 13563754 - 13563890
Alignment:
Q  29 tgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattg 128  Q
    ||||||||||| || | ||| ||||| ||||||||||   ||||||||| |||||||||| |||||||||||||| |  | |||||||| | |||| | |    
T  13563754 tgggaggtagggggagatgcctggagatggaggagacgattgtgggtgtaggaggaggagttgttaggcgagtgtcgtattttacttaacaattttgtag 13563853  T
Q  129 tgcatactgatgtttctgacagctggcagtggctccc 165  Q
    | || || |||||||||||||| ||||||||||||||    
T  13563854 ttcaaacagatgtttctgacaggtggcagtggctccc 13563890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 26 - 164
Target Start/End: Original strand, 8384451 - 8384589
Alignment:
Q  26 ggctgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatactttta 125  Q
    |||||||||||||| ||||  |||||||| |||||||||    |||||| ||||||||||||| || |||| |||||| || | |||||||| | ||||     
T  8384451 ggctgggaggtagggggtgaagcgtggagatggaggagaaggttgtgggagtgggaggaggagttgctaggggagtgtcgcctattacttaacaattttg 8384550  T
Q  126 ttgtgcatactgatgtttctgacagctggcagtggctcc 164  Q
    || |||| |||| |||| ||||||| |||||||||||||    
T  8384551 ttttgcagactgttgttactgacaggtggcagtggctcc 8384589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 17251909 - 17251992
Alignment:
Q  81 aggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctgacagctggcagtggctcc 164  Q
    |||||||| ||||||| |||||| || | | |||||| | |||| ||||||| |||||||||||| |||| ||||| |||||||    
T  17251909 aggaggagttgttaggtgagtgtcgcctttcacttaacaattttgttgtgcaaactgatgtttctcacaggtggcaatggctcc 17251992  T

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Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 29 - 288
Target Start/End: Original strand, 38355513 - 38355769
Alignment:
Q  29 tgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattg 128  Q
    |||||||| ||||||| |||||||||||||||||||||  ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  38355513 tgggaggtcggaggtgatgcgtggagctggaggagaccgttgtgggtgtgggag---gagatgttaggcgagtgttgcttgttacttaatacttttattg 38355609  T
Q  129 tgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctatacagtaagcaatgcgtacaagaacttaacgtttcaggctgcccc 228  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||    
T  38355610 tgcatactgatgtttctgacaggtggcagtggctcccggacattgggggaggctatacagtaagcaatgcatataagatcttaacgtttcaggctgcccc 38355709  T
Q  229 tttgattaccgtgacagatgatctcgtttggcacaagtatgttcctttgatgatgtccat 288  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||| | |||||||    
T  38355710 tttgattaccgtgacagatgatctcgtttggcacaagtatgtccctctgaaggtgtccat 38355769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 88 - 278
Target Start/End: Original strand, 52194486 - 52194676
Alignment:
Q  88 gatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctataca 187  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  52194486 gatgttaggcgagtgttgcctgttacttaatacttttattgtgcatactgatgtttctgacaggtggcagtggctcccggacattgggggaggctacaca 52194585  T
Q  188 gtaagcaatgcgtacaagaacttaacgtttcaggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtatgttcctttga 278  Q
     |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  52194586 ataagcaatgcgtatcagaacttaacgtttcaggctgcccctttgattaccgtgacagatgatctcgtttggcacaagcatgtccctttga 52194676  T

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Target: chr3; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 22 - 278
Target Start/End: Complemental strand, 55366937 - 55366681
Alignment:
Q  22 gcggggctgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatact 121  Q
    |||||| |||||||||||||| |  |||||||| |||||||||||  |||||||||||||||||||| |||||||||||||| || || |||||||||||    
T  55366937 gcggggttgggaggtaggaggcgaggcgtggagttggaggagaccgttgtgggtgtgggaggaggagttgttaggcgagtgtcgcctgctacttaatact 55366838  T
Q  122 tttattgtgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctatacagtaagcaatgcgtacaagaacttaacgtttcagg 221  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| |||||| |||||||||||||||||  | | ||||||||||||||    
T  55366837 tttattgtgcatactgatgtttctgacaggtggcagtggcttccggacattagggaaggctacacagtaagcaatgcgtatgacatcttaacgtttcagg 55366738  T
Q  222 ctgcccctttgattaccgtgacagatgatctcgtttggcacaagtatgttcctttga 278  Q
    |||| ||||| ||  ||||||||||||| ||||||||||||||| ||||||||||||    
T  55366737 ctgcacctttaatctccgtgacagatgagctcgtttggcacaagcatgttcctttga 55366681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 18381388 - 18381242
Alignment:
Q  19 catgcggggctgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaat 118  Q
    |||||| || ||||||||||| || | ||||||||| ||||||||||   |||||  ||||||||||||| |||||||||||||| || | ||||||||     
T  18381388 catgcgcggttgggaggtagggggagatgcgtggagatggaggagacggttgtggtcgtgggaggaggagttgttaggcgagtgtcgccttttacttaac 18381289  T
Q  119 acttttattgtgcatactgatgtttctgacagctggcagtggctccc 165  Q
    | |||| ||||||| ||||||||||||||||  ||||||||||||||    
T  18381288 aattttgttgtgcaaactgatgtttctgacaagtggcagtggctccc 18381242  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 173
Target Start/End: Complemental strand, 46189794 - 46189670
Alignment:
Q  48 cgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctga 147  Q
    ||||||| ||||||||||   |||||| ||| ||||||||| ||||||| |||||| ||   |||||||| | |||| ||||||| ||||||||||||||    
T  46189794 cgtggagttggaggagacaa-tgtgggagtgagaggaggagttgttaggtgagtgtcgccaattacttaacaattttgttgtgcagactgatgtttctga 46189696  T
Q  148 cagctggcagtggctcccggacattg 173  Q
    ||| ||| |||||||||| |||||||    
T  46189695 caggtggtagtggctccctgacattg 46189670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 161
Target Start/End: Original strand, 2427100 - 2427232
Alignment:
Q  29 tgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattg 128  Q
    ||||||| ||| |||| ||||||| | ||  |||||| | ||||||  ||||||||||||||| ||||||| | | ||   |||||| ||| |||| |||    
T  2427100 tgggaggaagggggtgctgcgtggggttgtcggagacgtttgtgggattgggaggaggagatgataggcgaatttcgccgtttacttgataattttgttg 2427199  T
Q  129 tgcatactgatgtttctgacagctggcagtggc 161  Q
    | || ||||||||||||||||| ||||||||||    
T  2427200 tacagactgatgtttctgacaggtggcagtggc 2427232  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 31921179 - 31921229
Alignment:
Q  38 ggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggag 88  Q
    ||||| || ||||||| ||||||||||||| ||||||||||||||||||||    
T  31921179 ggaggaggggcgtggaactggaggagacctttgtgggtgtgggaggaggag 31921229  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 31675232 - 31675191
Alignment:
Q  47 gcgtggagctggaggagacctctgtgggtgtgggaggaggag 88  Q
    ||||||| ||||||||||||| ||||||||||||||||||||    
T  31675232 gcgtggaactggaggagacctttgtgggtgtgggaggaggag 31675191  T

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Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 3705059 - 3704810
Alignment:
Q  19 catgcggggctgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaat 118  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  3705059 catgcgtggctgggaggtaggaggtgatgcgtggagctggaggagaccgttgtgggtgtgggaggaggagatgttaggcaagtgttgcctgttacttaat 3704960  T
Q  119 acttttattgtgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctatacagtaagcaatgcgtacaagaacttaacgtttc 218  Q
    ||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| |||||    
T  3704959 acttttattatgcatactgatgtttctaacagatggcagtggctcccggacattgggggaagctaaacagtaagcaatgcgtataagaacttaaagtttc 3704860  T
Q  219 aggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtat 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3704859 aggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtat 3704810  T

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Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 29 - 189
Target Start/End: Complemental strand, 39073463 - 39073303
Alignment:
Q  29 tgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattg 128  Q
    |||||||||||||| | ||||||||| |||||||||||  |||||| ||||||||||||||||||| |||||||| || | |||||||| | |||| |||    
T  39073463 tgggaggtaggaggagatgcgtggagttggaggagaccgttgtgggcgtgggaggaggagatgttaagcgagtgtcgccttttacttaacaattttgttg 39073364  T
Q  129 tgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctatacagt 189  Q
    ||||||||||||||| |||||| ||||| ||||||||||| |||| |||||||||||||||    
T  39073363 tgcatactgatgtttttgacaggtggcaatggctcccggatattgtgggaggctatacagt 39073303  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 13352884 - 13352788
Alignment:
Q  69 tgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctgacagctggcagtggctccc 165  Q
    |||||| ||||||||||||| |||||||||||||| ||   |||||||| | |||| ||||||| ||||||||||||| ||| |||||||| |||||    
T  13352884 tgtgggcgtgggaggaggagttgttaggcgagtgtcgccatttacttaacaattttgttgtgcaaactgatgtttctggcaggtggcagtgactccc 13352788  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 18734834 - 18734740
Alignment:
Q  68 ctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctgacagctggcagtggct 162  Q
    |||||||  ||||||||||||||| ||| ||||||| ||   |||||| ||| |||| ||||||||||||||||||||||||| |||||||||||    
T  18734834 ctgtgggattgggaggaggagatgatagacgagtgtcgccgtttacttgataattttgttgtgcatactgatgtttctgacaggtggcagtggct 18734740  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 173
Target Start/End: Original strand, 56337337 - 56337462
Alignment:
Q  48 cgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctga 147  Q
    ||||||| ||||||||||   |||||| || |||||||||| ||||||||||||||  |   |||||||| | |||| ||||||| ||||||||||| ||    
T  56337337 cgtggagttggaggagacggttgtgggagtaggaggaggagttgttaggcgagtgtctccgattacttaacaattttgttgtgcagactgatgtttcaga 56337436  T
Q  148 cagctggcagtggctcccggacattg 173  Q
    ||| |||| ||||||||| |||||||    
T  56337437 caggtggcggtggctccctgacattg 56337462  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 172
Target Start/End: Complemental strand, 36182857 - 36182714
Alignment:
Q  29 tgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattg 128  Q
    ||||||||||| || |  |||||||| |||||||||    | |||| ||||||||||||| || |||| | |||| |||| |||||||| | |||| ||     
T  36182857 tgggaggtagggggagaagcgtggagatggaggagaaggttatgggagtgggaggaggagttgctaggggtgtgtcgctttttacttaacaattttgttt 36182758  T
Q  129 tgcatactgatgtttctgacagctggcagtggctcccggacatt 172  Q
    |||| ||||||||| ||||||| ||||||| |||||| ||||||    
T  36182757 tgcagactgatgttactgacaggtggcagtagctccctgacatt 36182714  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 162
Target Start/End: Complemental strand, 41382245 - 41382160
Alignment:
Q  77 tgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctgacagctggcagtggct 162  Q
    ||||||||| ||||| ||||||||||| ||   |||||| ||  |||| ||||||| ||||||||||||||||| |||||||||||    
T  41382245 tgggaggagcagatgataggcgagtgtcgccgtttacttgatgattttgttgtgcagactgatgtttctgacaggtggcagtggct 41382160  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 9690703 - 9690613
Alignment:
Q  69 tgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctgacagctggcagtg 159  Q
    ||||||||||||||||||||||| |||  |||||| |  | |||||| ||||| ||  |||||| ||| ||||||||||||| ||||||||    
T  9690703 tgtgggtgtgggaggaggagatggtagaagagtgtaggcttttacttgatactgtttgtgtgcagactaatgtttctgacaggtggcagtg 9690613  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 60 - 162
Target Start/End: Complemental strand, 38070122 - 38070020
Alignment:
Q  60 ggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctgacagctggcagtg 159  Q
    |||||| | ||||||  ||||||||||||||| ||||||||||| ||   |||||| ||| |||| ||||||| ||||||||||||||||| ||||||||    
T  38070122 ggagacgtttgtgggattgggaggaggagatgataggcgagtgtcgccgtttacttgataattttgttgtgcagactgatgtttctgacaggtggcagtg 38070023  T
Q  160 gct 162  Q
    |||    
T  38070022 gct 38070020  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 186
Target Start/End: Complemental strand, 22566316 - 22566223
Alignment:
Q  93 taggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctatac 186  Q
    ||||||||||| |   ||||||| ||| |||| || |||| ||||||||||||||||| |||||||||||||  ||||||| ||| ||||||||    
T  22566316 taggcgagtgtcgacagttacttgataattttgttttgcagactgatgtttctgacaggtggcagtggctccttgacattgaggggggctatac 22566223  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 3544930 - 3544980
Alignment:
Q  38 ggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggag 88  Q
    ||||| || ||||||| ||||||||||||| ||||||||||||||||||||    
T  3544930 ggaggaggggcgtggaactggaggagacctttgtgggtgtgggaggaggag 3544980  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 40563378 - 40563437
Alignment:
Q  29 tgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggag 88  Q
    ||||||| ||| |||| ||||||||| |||||||||| | |||||| |||||||||||||    
T  40563378 tgggaggaaggtggtgatgcgtggagttggaggagacgtttgtgggcgtgggaggaggag 40563437  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 1248414 - 1248471
Alignment:
Q  38 ggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttag 95  Q
    ||||| || |||||||  |||||||||||| ||||||| |||||||||||| ||||||    
T  1248414 ggaggaggggcgtggaattggaggagacctttgtgggtatgggaggaggagctgttag 1248471  T

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Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 34429 - 34488
Alignment:
Q  29 tgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggag 88  Q
    |||||||  ||||| || ||||||| ||||||||||||| ||||||||||||||||||||    
T  34429 tgggagggtggaggaggggcgtggaactggaggagacctttgtgggtgtgggaggaggag 34488  T

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Target: scaffold0555 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 7979 - 7929
Alignment:
Q  38 ggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggag 88  Q
    ||||| || ||||||| ||||||||||||| ||||||||||||||||||||    
T  7979 ggaggaggggcgtggaactggaggagacctttgtgggtgtgggaggaggag 7929  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 476524 - 476474
Alignment:
Q  38 ggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggag 88  Q
    ||||| || ||||||| || |||||||||| ||||||||||||||||||||    
T  476524 ggaggaggggcgtggaactagaggagacctttgtgggtgtgggaggaggag 476474  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 23923129 - 23923083
Alignment:
Q  69 tgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttactt 115  Q
    |||||||||||||||||||||||||||  |||||| | |||||||||    
T  23923129 tgtgggtgtgggaggaggagatgttagcggagtgtaggttgttactt 23923083  T

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Target: scaffold0189 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 6390 - 6349
Alignment:
Q  47 gcgtggagctggaggagacctctgtgggtgtgggaggaggag 88  Q
    |||||||| |||||||||| | ||||||||||||||||||||    
T  6390 gcgtggagttggaggagacgtttgtgggtgtgggaggaggag 6349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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