View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19425_high_66 (Length: 254)
Name: NF19425_high_66
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_high_66 |
 | |
|
| [»] scaffold0197 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0197 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 163 - 254
Target Start/End: Original strand, 4271 - 4362
Alignment:
| Q |
163 |
aaaacatatttaacccttaaaacaaccacatataaaaatgatttttcggagaaattattcatcacagtttcttgaagcaatttttagatatt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4271 |
aaaacatatttaacccttaaaacaaccacatataaaaatgatttttgggagaaattattcatcacagtttcttgaagcaatttttagatatt |
4362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 3733 - 3785
Alignment:
| Q |
116 |
gttgaagctagtttgtgtttgttcatcctaattaaatttacctttttaaaaca |
168 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3733 |
gttgaagctattttgtgtttgttcatcctaattaaatttacctttttaaaaca |
3785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University