View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19425_high_74 (Length: 243)

Name: NF19425_high_74
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19425_high_74
NF19425_high_74
[»] chr2 (1 HSPs)
chr2 (14-228)||(36004775-36004989)
[»] chr8 (2 HSPs)
chr8 (126-210)||(40109646-40109730)
chr8 (117-207)||(17823846-17823936)
[»] chr6 (2 HSPs)
chr6 (118-211)||(12307690-12307783)
chr6 (118-150)||(1063759-1063791)
[»] chr5 (1 HSPs)
chr5 (130-207)||(7828024-7828102)
[»] chr7 (1 HSPs)
chr7 (126-207)||(8592547-8592629)
[»] chr1 (1 HSPs)
chr1 (117-150)||(37238951-37238984)
[»] chr3 (1 HSPs)
chr3 (117-207)||(44301485-44301577)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 36004775 - 36004989
Alignment:
Q  14 aacctgtgtttaactaatatcttaacatgcgaggcgataatctcatatgatcacaagaccaaatctatactccatttgttttatataattatcacattta 113  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36004775 aacctatgttcaactaatatcttaacatgcgaggcgataatctcatatgatcacaagactaaatctatactccatttgttttatataattatcacattta 36004874  T
Q  114 cacttttttctgtctcaaaataattttcattttaaaaagcaatgcaatatttattatatttctgcactaatatattcttatttattaaatttcactcatc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36004875 cacttttttctgtctcaaaataattttcattttaaaaagcaatgcaacatttattatatttctgcactaatatattcttatttattaaatttcactcatc 36004974  T
Q  214 cactgactcatcact 228  Q
    |||| ||||||||||    
T  36004975 cactaactcatcact 36004989  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 210
Target Start/End: Original strand, 40109646 - 40109730
Alignment:
Q  126 tctcaaaataattttcattttaaaaagcaatgcaatatttattatatttctgcactaatatattcttatttattaaatttcactc 210  Q
    ||||||||||||| |||||||| ||   ||||||| ||||||||||||| | |||||||||||||||||||||| ||||||||||    
T  40109646 tctcaaaataattgtcattttagaatataatgcaacatttattatatttttccactaatatattcttatttattgaatttcactc 40109730  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 17823846 - 17823936
Alignment:
Q  117 ttttttctgtctcaaaataattttcatttta-aaaagcaatgcaatatttattatatttctgcactaatatattcttatttattaaatttca 207  Q
    |||||||||||||||||||||| ||| |||| || | |||| ||||||||||||| || || ||||| |||| | ||||||||| |||||||    
T  17823846 ttttttctgtctcaaaataattgtcaatttataataacaatacaatatttattat-ttcctccactattatactattatttatttaatttca 17823936  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 12307783 - 12307690
Alignment:
Q  118 tttttctgtctcaaaataattttcattttaaaa-agcaatgcaatatttattatatttctgcactaatatattcttatttattaaatttcactca 211  Q
    ||||| ||||||||||||||| ||| ||||||| |  ||| ||| ||||||||| ||| |  ||||||||||||||||||||| |||||||||||    
T  12307783 tttttatgtctcaaaataattgtcactttaaaatattaatacaacatttattattttt-tcaactaatatattcttatttattgaatttcactca 12307690  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 1063791 - 1063759
Alignment:
Q  118 tttttctgtctcaaaataattttcattttaaaa 150  Q
    ||||||||||||||||||||| |||||||||||    
T  1063791 tttttctgtctcaaaataattgtcattttaaaa 1063759  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 7828102 - 7828024
Alignment:
Q  130 aaaataattttcattttaaaa-agcaatgcaatatttattatatttctgcactaatatattcttatttattaaatttca 207  Q
    |||| |||| ||||||||||| | |||||||||||||||||| ||| | || || ||||| ||||||||||||||||||    
T  7828102 aaaaaaattatcattttaaaatatcaatgcaatatttattatcttttttcattattatatccttatttattaaatttca 7828024  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 8592629 - 8592547
Alignment:
Q  126 tctcaaaataattttcatttta-aaaagcaatgcaatatttattatatttctgcactaatatattcttatttattaaatttca 207  Q
    |||||||||||||||||||||| || | |||||||  ||||||||| |||    |||| |||| |||||||||||||||||||    
T  8592629 tctcaaaataattttcattttacaatatcaatgcagcatttattattttttcctactattatactcttatttattaaatttca 8592547  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 150
Target Start/End: Original strand, 37238951 - 37238984
Alignment:
Q  117 ttttttctgtctcaaaataattttcattttaaaa 150  Q
    |||||||||||||||||||||| |||||||||||    
T  37238951 ttttttctgtctcaaaataattgtcattttaaaa 37238984  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 44301485 - 44301577
Alignment:
Q  117 ttttttctgtctcaaaataattttcattttaaaa-agcaatgcaatatttatta-tatttctgcactaatatattcttatttattaaatttca 207  Q
    |||| ||| ||||||||||||| ||| |||| || | |||||||| |||||||| ||||| | ||||| |||| ||||||||||| |||||||    
T  44301485 ttttctctttctcaaaataattgtcactttataatatcaatgcaacatttattaatatttttccactattatactcttatttattgaatttca 44301577  T

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