View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19425_high_77 (Length: 236)
Name: NF19425_high_77
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_high_77 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 201
Target Start/End: Complemental strand, 36989240 - 36989045
Alignment:
| Q |
6 |
aggaggagcagagaaaacaggagagtccattaaggagacagctgccaacattggtgcttcagccaaatctggcatggaaaaaaccaaggccacatttcaa |
105 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
36989240 |
aggaggagcaaagaaaacaggagagtccattaaggagacagctgccaacattggtgcttcagccaaatctggcatggaaaagaccaaggccactcttcag |
36989141 |
T |
|
| Q |
106 |
gagaaggtaattcctttcatttcatataaatattccgcaatcttttttggtaaataatagtatttctcaatttgat-tttttatagattgatcaaat |
201 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||| ||||||| || |||||||||||||||||||| |
|
|
| T |
36989140 |
gagaaggtaattcctttcatttcctataaatattccgcaatct-ttttggtaaatgatagtatttttcaatttaatatttttatagattgatcaaat |
36989045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 6 - 133
Target Start/End: Complemental strand, 36994981 - 36994854
Alignment:
| Q |
6 |
aggaggagcagagaaaacaggagagtccattaaggagacagctgccaacattggtgcttcagccaaatctggcatggaaaaaaccaaggccacatttcaa |
105 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36994981 |
aggaggagcaaagaaaacaggagagtccattaaggagacagctgccaacattggtgcttcagccaaatctggcatggaaaaaaccaaggccacatttcaa |
36994882 |
T |
|
| Q |
106 |
gagaaggtaattcctttcatttcatata |
133 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
36994881 |
gagaaggtaattcctttcatttcatata |
36994854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 36999519 - 36999418
Alignment:
| Q |
25 |
ggagagtccattaaggagacagctgccaacattggtgcttcagccaaatctggcatggaaaaaaccaaggccacatttcaagagaaggtaattcctttca |
124 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||| ||||||||||||| |||||||| | |
|
|
| T |
36999519 |
ggagagaccattaaggaaacagctgccaacattggtgcttctgccaaatctggtatggagaagaccaaggccacccttcaagagaaggt-attcctttaa |
36999421 |
T |
|
| Q |
125 |
ttt |
127 |
Q |
| |
|
||| |
|
|
| T |
36999420 |
ttt |
36999418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 22953964 - 22953898
Alignment:
| Q |
32 |
ccattaaggagacagctgccaacattggtgcttcagccaaatctggcatggaaaaaaccaaggccac |
98 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| || ||||| |||||| |||| || ||||| ||||| |
|
|
| T |
22953964 |
ccattaaggaaacagcagccaacattggtgcatctgccaagtctggcttggagaagaccaaagccac |
22953898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University