View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19425_high_79 (Length: 232)
Name: NF19425_high_79
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_high_79 |
 | |
|
| [»] scaffold0531 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 27854502 - 27854285
Alignment:
| Q |
1 |
taatatcactacaagaaacttgacctttagtgatggataaaagcagtcactacaggctaattttcgtgggtatatatggcgaaaactttgacccacggcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27854502 |
taatatcactacaagaaacttgacctttagtgatgggtaaaaacagtcactacaggctaattttcgtgggtatatatggcaaaaactttgacccacggcc |
27854403 |
T |
|
| Q |
101 |
acattggccgtgcactatacttagcaagttgcaacggatttcttatagattaatctacaatcctttctacaaaatgggaaaaatatatattaatgatgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
27854402 |
acattggccgtgcactatacttagcaagttgcaacggatttcttgtagattaatctacaatcctttctacaaaacgggaaaaatttatattaatgatgtt |
27854303 |
T |
|
| Q |
201 |
gaatttgatgttgttaat |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
27854302 |
gaatttgatgttgttaat |
27854285 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 22710105 - 22710243
Alignment:
| Q |
3 |
atatcactacaagaaacttgacctttagtgatggataaaagcagtcactacaggctaattttcgtgggtatatatggcgaaaactttgacccacggccac |
102 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || |||| | ||||||| |||||| ||| ||| ||||||| |||| |||||||| ||||||||||| |
|
|
| T |
22710105 |
atatcactacaagaaacttgacctctagtgacgggcaaaaaccgtcactaaaggctattttccgtaggtatatgtggccaaaactttcacccacggccat |
22710204 |
T |
|
| Q |
103 |
attggccgtgcactatacttagcaagttgcaacggattt |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22710205 |
attggccgtgcactatacttagcaagttgcaacggattt |
22710243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 24806779 - 24806644
Alignment:
| Q |
6 |
tcactacaagaaacttgacctttagtgatggataaaagcagtcactacaggctaattttcgtgggtatatatggcgaaaactttgacccacggccacatt |
105 |
Q |
| |
|
||||||||||||||||||||| |||||| || |||| | ||||||| |||||| ||| ||| ||||||| |||| |||||||| ||||||||||| ||| |
|
|
| T |
24806779 |
tcactacaagaaacttgacctctagtgacgggcaaaaaccgtcactaaaggctattttccgtaggtatatgtggccaaaactttcacccacggccatatt |
24806680 |
T |
|
| Q |
106 |
ggccgtgcactatacttagcaagttgcaacggattt |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
24806679 |
ggccgtgcactatacttagcaagttgcaacggattt |
24806644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 26280547 - 26280625
Alignment:
| Q |
6 |
tcactacaagaaacttgacctttagtgatggataaaagcagtcactacaggctaattttcgtgggtatatatggcgaaaa |
85 |
Q |
| |
|
||||||||||||||||||| |||||||| || |||| || |||||| |||||| ||| |||||| |||||||| ||||| |
|
|
| T |
26280547 |
tcactacaagaaacttgacttttagtgacgggaaaaacca-tcactagaggctagtttccgtgggcatatatggtgaaaa |
26280625 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 1710141 - 1710007
Alignment:
| Q |
7 |
cactacaagaaacttgacctttagtgatggataaaagcagtcactacaggctaattttcgtgggtatatatggcgaaaactttgacccacggccacattg |
106 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||| | ||||||| |||||| ||| ||| |||||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
1710141 |
cactacaagaaacttgacctctagtgacgggcaaaaaccgtcactaaaggctattttccgtaggtatatatggccaaaactttcacccacggccatattg |
1710042 |
T |
|
| Q |
107 |
gccgtgcactatacttagcaagttgcaacggattt |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
1710041 |
gccgtgcactatacttagcaagttgcaacggattt |
1710007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 7647504 - 7647605
Alignment:
| Q |
7 |
cactacaagaaacttgacctttagtgatggataaaagcagtcactacaggctaattttcgtgggtatatatggcgaaaactttgacccacggccacattg |
106 |
Q |
| |
|
|||||| ||||||||||| | || |||||| |||| | |||||||| |||||||||||||| ||||| |||||| ||| |||||| |||||||||||| |
|
|
| T |
7647504 |
cactacgagaaacttgacatgtactgatgggcaaaaaccatcactacatgctaattttcgtggatatatgtggcgagaaccttgaccgacggccacattg |
7647603 |
T |
|
| Q |
107 |
gc |
108 |
Q |
| |
|
|| |
|
|
| T |
7647604 |
gc |
7647605 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 15274612 - 15274747
Alignment:
| Q |
6 |
tcactacaagaaacttgacctttagtgatggataaaagcagtcactacaggctaattttcgtgggtatatatggcgaaaactttgacccacggccacatt |
105 |
Q |
| |
|
||||||||||||||||||||| |||||| || |||| | ||||||| |||||| ||| ||| ||||||| |||| |||||||| ||||||||||| ||| |
|
|
| T |
15274612 |
tcactacaagaaacttgacctctagtgacgggcaaaaaccgtcactaaaggctattttccgtaggtatatgtggccaaaactttcacccacggccatatt |
15274711 |
T |
|
| Q |
106 |
ggccgtgcactatacttagcaagttgcaacggattt |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
15274712 |
ggccgtgcactatacttagcaagttgcaacggattt |
15274747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 11892375 - 11892513
Alignment:
| Q |
7 |
cactacaagaaacttgacctttagtgatggataaaagcagtcactacaggctaattttcgtgggt---atatatggcgaaaactttgacccacggccaca |
103 |
Q |
| |
|
||||||||||||||||| ||||| | | || |||| | ||||||| |||||||||||||||||| |||| || || || ||||||| || ||||| |
|
|
| T |
11892375 |
cactacaagaaacttgatctttaataaagggaaaaaaccgtcactaaaggctaattttcgtgggtataatatttgatgacaattttgaccaacaaccaca |
11892474 |
T |
|
| Q |
104 |
ttggccgtgcactatacttagcaagttgcaacggatttct |
143 |
Q |
| |
|
|||| |||||| ||||||| || |||||||||||||||| |
|
|
| T |
11892475 |
ttggttgtgcaccatactta-catgttgcaacggatttct |
11892513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 12412495 - 12412630
Alignment:
| Q |
6 |
tcactacaagaaacttgacctttagtgatggataaaagcagtcactacaggctaattttcgtgggtatatatggcgaaaactttgacccacggccacatt |
105 |
Q |
| |
|
||||||||||||||||||||| |||||| || |||| | ||||||| |||||| ||| ||| ||||||| |||| |||||||| |||||| |||||||| |
|
|
| T |
12412495 |
tcactacaagaaacttgacctctagtgacgggcaaaaaccgtcactaaaggctattttccgtaggtatatgtggccaaaactttcacccacagccacatt |
12412594 |
T |
|
| Q |
106 |
ggccgtgcactatacttagcaagttgcaacggattt |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
12412595 |
ggccgtgcactatacttagcaagttgcaacggattt |
12412630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 18150225 - 18150359
Alignment:
| Q |
7 |
cactacaagaaacttgacctttagtgatggataaaagcagtcactacaggctaattttcgtgggtatatatggcgaaaactttgacccacggccacattg |
106 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||| | ||||||| |||||| ||| ||| ||||||| |||| |||||||| ||||||||||| |||| |
|
|
| T |
18150225 |
cactacaagaaacttgacctctagtgacgggcaaaaaccgtcactaaaggctattttccgtaggtatatgtggccaaaactttcacccacggccatattg |
18150324 |
T |
|
| Q |
107 |
gccgtgcactatacttagcaagttgcaacggattt |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
18150325 |
gccgtgcactatacttagcaagttgcaacggattt |
18150359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 13792133 - 13792267
Alignment:
| Q |
7 |
cactacaagaaacttgacctttagtgatggataaaagcagtcactacaggctaattttcgtgggtatatatggcgaaaactttgacccacggccacattg |
106 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||| | ||||||| |||||| ||| ||| ||||||| |||| |||||||| | |||||||||||||| |
|
|
| T |
13792133 |
cactacaagaaacttgacctcaagtgacgggcaaaaaccgtcactaaaggctattttccgtaggtatatgtggccaaaactttcatccacggccacattg |
13792232 |
T |
|
| Q |
107 |
gccgtgcactatacttagcaagttgcaacggattt |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
13792233 |
gccgtgcactatacttagcaagttgcaacggattt |
13792267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 24221769 - 24221903
Alignment:
| Q |
7 |
cactacaagaaacttgacctttagtgatggataaaagcagtcactacaggctaattttcgtgggtatatatggcgaaaactttgacccacggccacattg |
106 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||| | ||||||| |||||| ||| ||| ||||||| |||| |||||||| ||||||||||| |||| |
|
|
| T |
24221769 |
cactacaagaaacttgacctctagtgacgggcaaaaaccgtcactaaaggctattttccgtaggtatatgtggccaaaactttcacccacggccatattg |
24221868 |
T |
|
| Q |
107 |
gccgtgcactatacttagcaagttgcaacggattt |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
24221869 |
gccgtgcactatacttagcaagttgcaacggattt |
24221903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 1773397 - 1773531
Alignment:
| Q |
7 |
cactacaagaaacttgacctttagtgatggataaaagcagtcactacaggctaattttcgtgggtatatatggcgaaaactttgacccacggccacattg |
106 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||| | |||||| |||||| ||| | | ||||||| |||| |||||||| |||||||||||||||| |
|
|
| T |
1773397 |
cactacaagaaacttgacctctagtgacgggcaaaaaccatcactaaaggctattttccataggtatatgtggccaaaactttcacccacggccacattg |
1773496 |
T |
|
| Q |
107 |
gccgtgcactatacttagcaagttgcaacggattt |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
1773497 |
gccgtgcactatacttagcaagttgcaacggattt |
1773531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 19476006 - 19476140
Alignment:
| Q |
7 |
cactacaagaaacttgacctttagtgatggataaaagcagtcactacaggctaattttcgtgggtatatatggcgaaaactttgacccacggccacattg |
106 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||| | ||||||| |||||| ||| ||| ||||||| | || |||||||| |||||| | ||||||| |
|
|
| T |
19476006 |
cactacaagaaacttgacctctagtgacgggcaaaaaccgtcactaaaggctattttccgtaggtatatgttgccaaaactttcacccacagtcacattg |
19476105 |
T |
|
| Q |
107 |
gccgtgcactatacttagcaagttgcaacggattt |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
19476106 |
gccgtgcactatacttagcaagttgcaacggattt |
19476140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 19546931 - 19547065
Alignment:
| Q |
7 |
cactacaagaaacttgacctttagtgatggataaaagcagtcactacaggctaattttcgtgggtatatatggcgaaaactttgacccacggccacattg |
106 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||| | ||||||| |||||| ||| ||| ||||||| | || |||||||| |||||| | ||||||| |
|
|
| T |
19546931 |
cactacaagaaacttgacctctagtgacgggcaaaaaccgtcactaaaggctattttccgtaggtatatgttgccaaaactttcacccacagtcacattg |
19547030 |
T |
|
| Q |
107 |
gccgtgcactatacttagcaagttgcaacggattt |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
19547031 |
gccgtgcactatacttagcaagttgcaacggattt |
19547065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 19585758 - 19585624
Alignment:
| Q |
7 |
cactacaagaaacttgacctttagtgatggataaaagcagtcactacaggctaattttcgtgggtatatatggcgaaaactttgacccacggccacattg |
106 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||| | ||||||| |||||| ||| ||| ||||||| | || |||||||| |||||| | ||||||| |
|
|
| T |
19585758 |
cactacaagaaacttgacctctagtgacgggcaaaaaccgtcactaaaggctattttccgtaggtatatgttgccaaaactttcacccacagtcacattg |
19585659 |
T |
|
| Q |
107 |
gccgtgcactatacttagcaagttgcaacggattt |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
19585658 |
gccgtgcactatacttagcaagttgcaacggattt |
19585624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 16247395 - 16247465
Alignment:
| Q |
71 |
tatatatggcgaaaactttgacccacggccacattggccgtgcactatacttagcaagttgcaacggattt |
141 |
Q |
| |
|
||||| |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16247395 |
tatatgtggccaaaactttcacccacggccatattggccgtgcactatacttagcaagttgcaacggattt |
16247465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 28325615 - 28325680
Alignment:
| Q |
9 |
ctacaagaaacttgacctttagtgatggataaaagcagtcactacaggctaattttcgtgggtata |
74 |
Q |
| |
|
||||||| |||||||| | ||||||||| |||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
28325615 |
ctacaaggaacttgacttgtagtgatgggcaaaagccgtcacaacaggctaattttcgtgggtata |
28325680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 10621 - 10734
Alignment:
| Q |
7 |
cactacaagaaacttgaccttta--gtgatggataaaagcagtcactacaggctaattttcgtgggtatatatggcgaaaactttgacccacggccacat |
104 |
Q |
| |
|
|||||||||||||||||| | || ||||||| |||| || ||||||||||||||||| ||||| ||||||| || ||| ||||| |||||||| |
|
|
| T |
10621 |
cactacaagaaacttgacttgtatagtgatgggcaaaaacaatcactacaggctaatttccgtgg--atatatgttgagaacattgactggcggccacac |
10718 |
T |
|
| Q |
105 |
tggccgtgcactatac |
120 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
10719 |
tggccgtgcattatac |
10734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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