View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_high_82 (Length: 227)
Name: NF19425_high_82
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_high_82 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 9503900 - 9503684
Alignment:
| Q |
11 |
taacctctttgaaatcaacgtgtttatacaacaaatattcttatagcattgaagatttccacttgtttgaccatacacccaagtattaagaacaggtcaa |
110 |
Q |
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| T |
9503900 |
taacctctttgaaatcaacgtgtttatacaacaaatattcttgtattattgaaaatttccacgtgtttgaccatacacacaagtattaagaacaggtcaa |
9503801 |
T |
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| Q |
111 |
gattcatatgtaataatttatttccgtccaataatcttcaaagatttaaataatgagacactttcccaatagtattaagattgaaaatcatatacgcaaa |
210 |
Q |
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| T |
9503800 |
gattcatatgtaataatttatttccgtccaataatcttcaaagatttaaataatgagacactttcccaatagtattaagattgaaaatcatatacgcaaa |
9503701 |
T |
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| Q |
211 |
acatgtggcaaacttgt |
227 |
Q |
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| T |
9503700 |
acatgtggcaaacttgt |
9503684 |
T |
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