View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_1 (Length: 829)
Name: NF19425_low_1
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 412 - 812
Target Start/End: Original strand, 7778696 - 7779097
Alignment:
| Q |
412 |
ctctttcaagcatgataatatactcatta---aagggattc-ttgagtccactaatgactaaatttccatttcaagttcaactaatggagaaatgtcttc |
507 |
Q |
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|||||||||| |||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7778696 |
ctctttcaagtatgataatatactcattattaaagagattccttgagtccactaatgactaaatttccatttcaagttcaactaatggagaaatgtcttc |
7778795 |
T |
|
| Q |
508 |
tgcaatggcctgattattgtcaatcaaatatgttatgtactaatattatgaacccatgcaacgcaagagtataaggtcttaaaaataatttatgttagtt |
607 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7778796 |
tgcaacggcctgattattgtcaatcaaatatgttatgtactagtattatgaacccatgcaacgcaagagtataaggtcttaaaaataatttatgttagtt |
7778895 |
T |
|
| Q |
608 |
acaatttacaatctgttgtgtttagttgttaagtagaaacaacgttcaacattaagttatagtatcacattagagattagaccgacataaatgcggtgta |
707 |
Q |
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| T |
7778896 |
acaatttacaatctgttgtgtttagttgttaagtagaaacaacgttcaacattaagttatagtatcagattagagattagaccgacataaatgcggtgta |
7778995 |
T |
|
| Q |
708 |
tcaactgtcaaatgcttctttgataaagctaaacagaaaatcaaaacacatcagtaatgtttaataatattatatggtaattgaacacacctgtaatagt |
807 |
Q |
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| T |
7778996 |
tcaactgttaaatgcttctttgataaagctaaacagaaaatcaaaacacatcagtaatgtttaataa---tatatggtaattgaacacacctgtaatagt |
7779092 |
T |
|
| Q |
808 |
gtcag |
812 |
Q |
| |
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||||| |
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| T |
7779093 |
gtcag |
7779097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 37751914 - 37751787
Alignment:
| Q |
86 |
cacgtaaaaatattatcggttagccacatgaaactacatttaagattttcctattctctgt------agattaa-tacatgaacatgtcacagtagtaga |
178 |
Q |
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|||||| |||||||| |||||||||||| |||||||| ||||||||| |||| |||| | ||| ||| |||||||||||||||||| || | |
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| T |
37751914 |
cacgtagaaatattaatggttagccacataaaactacacttaagatttccctaatctccatctcgatagagtaaatacatgaacatgtcacaggag---a |
37751818 |
T |
|
| Q |
179 |
aatagaaaataaaagcactactgtcataacc |
209 |
Q |
| |
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|||||||||||||||||| |||||||||||| |
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| T |
37751817 |
aatagaaaataaaagcacaactgtcataacc |
37751787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 7779491 - 7779525
Alignment:
| Q |
175 |
tagaaatagaaaataaaagcactactgtcataacc |
209 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
7779491 |
tagaaatagaaaataaaagcactactgtcataacc |
7779525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 347 - 812
Target Start/End: Original strand, 30275321 - 30275786
Alignment:
| Q |
347 |
aagtgactcaggtaacttgaatctagaactatcttgctccattgcacttgtttcataagttagaactctttcaagcatgataatatactcattaaaggga |
446 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| || |||||||||| ||||||||||||||||||||| || |
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| T |
30275321 |
aagtgactcaggtaacttgattctagaactatcttgctccgttgcacttgtttcataagtaagggctctttcaagtatgataatatactcattaaagaga |
30275420 |
T |
|
| Q |
447 |
ttcttgagtccactaatgactaaatttcc-atttcaagttcaactaatggagaaatgtcttctgcaatggcctgattattgtcaatcaaatat--gttat |
543 |
Q |
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||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30275421 |
ttcttgagtccgctaataactaaatttcccatttcaagttcaactaatggagaaatgtcttctgcaatggcctgattattgtcaatcaaatatatgttat |
30275520 |
T |
|
| Q |
544 |
gtactaatattatgaacccatgcaacgcaagagtataaggtcttaaaaataatttatgttagttacaatttacaatctgttgtgtttagttgttaagtag |
643 |
Q |
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|| ||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||| |
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| T |
30275521 |
gtcctagtattatgaacccatgcaacgcaagaggataagttcttaaaaataatttatgttcgttacaatttacaatctgctgtgtttagttattaagtag |
30275620 |
T |
|
| Q |
644 |
aaacaacgttcaacattaagttatagtatcacattagagattagaccgacataaatgcggtgtatcaactgtcaaatgcttctttgataaagctaaacag |
743 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| ||||||||||||| ||||||||| |||||||||||||| |||||||||||| |||||||||||||| |
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| T |
30275621 |
aaacgacgttcaacattaaattatagtatcacaatagagattagaccaacataaatgtggtgtatcaactgttaaatgcttcttttataaagctaaacag |
30275720 |
T |
|
| Q |
744 |
aaaatcaaaacacatcagtaatgtttaataatattatatggtaattgaacacacctgtaatagtgtcag |
812 |
Q |
| |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
30275721 |
aaaatcaaaacacatcagtaatgtttaataa---tgtatggtaattgaacacacctgtaatagtgtcag |
30275786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 224 - 346
Target Start/End: Original strand, 30275162 - 30275284
Alignment:
| Q |
224 |
ctcttcaataaacatcagaaaaacatcaagttcatgatgcttaagaccaactgagtggttctccaccaattgtgaatacatgataaagatatctttgacc |
323 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||||||||| |
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| T |
30275162 |
ctcttcaataaacatcagaaaaacatcgagttcatgatgcttaaaaccaactgagtggttctccaccaattgtgaatccatgctgaagatatctttgacc |
30275261 |
T |
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| Q |
324 |
atagtagagagaaactgcaccaa |
346 |
Q |
| |
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|| |||||||||||||||||||| |
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| T |
30275262 |
atggtagagagaaactgcaccaa |
30275284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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