View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_12 (Length: 518)
Name: NF19425_low_12
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 53496617 - 53496140
Alignment:
| Q |
1 |
ataatgaaaaaccattggtaaaatgatacccttttatagcaataaaagagtcattacaatctctacgaaaaataaaagaattgttacatacaaacacttt |
100 |
Q |
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| T |
53496617 |
ataatgaaaaaccattggtaaaatgatacccttttatagcaataaaagagtcattacaatctctacgaaaaataaaagaattgttacatacaaacacttt |
53496518 |
T |
|
| Q |
101 |
attt---agacgttcttggacaatattcataataaattccattcaagaaagtattcataatatagattaagctaaaattaaaaacttggaaaattaaaat |
197 |
Q |
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| T |
53496517 |
tttttatatatatttttttacaatattcataataaattccattcaagaaagtattcataatatagattaggctaaaattaaaaacttggaaaattaaaat |
53496418 |
T |
|
| Q |
198 |
tagacgttcttgtaagggtgtgagctacaagatttgtttgctacctaatgaaactaaaagttttgcaacccaactcacttagccatagtaaggcttcata |
297 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53496417 |
tagacgttcttgcaagggtgtgagctacaagatttgtttgctacctaatgaaactaaaagttttgcaacccaactcacttagccatagtaaggcttcata |
53496318 |
T |
|
| Q |
298 |
taatcctaaagcatcagcctacaaaaatggaatagatgcctccttccaaaatccaaatagttttgggtttgatgaattcccctttctgattccgaatgta |
397 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
53496317 |
taatcctaaagcatcagcctacagaaatggaatagatgcctccttccaaaatccaaatagtattgggtttgacgaattcccctttctgattccgaatgta |
53496218 |
T |
|
| Q |
398 |
catccctactccataacatccttattgatggaaaattgctgcgtctactttacatttcagctcagccggatcaagttt |
475 |
Q |
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| T |
53496217 |
catccctactccataacatccttattgatggtaaattgctgcgtctagtttacatttcagctcagccggatcaagttt |
53496140 |
T |
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