View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_14 (Length: 503)
Name: NF19425_low_14
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 17 - 492
Target Start/End: Original strand, 43663558 - 43664033
Alignment:
| Q |
17 |
tatctttctatgtagctttcttggtttgctttcttttcttcttatttacgttcttgcggttggtacaagaaatcaacatccttacaaattgctttaacga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43663558 |
tatctttctatgtagctttcttggtttgctttcttttcttcttatttacgttcttgcggttggtacaagaaatcaacatccttacaaactgctttaacga |
43663657 |
T |
|
| Q |
117 |
taatgctcttcttcacctatcagtgtctaacgcacatgcatttaccacattactatgttgcaaacatagcatatattaatgtgctgctaagctttaattg |
216 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43663658 |
taatgctcttcttcacctattagtgtctaacgcacatgcatttaccacattactatgttgcaaacatagcatatattaatgtgctgccaagctttaattg |
43663757 |
T |
|
| Q |
217 |
gcaagtcaaatttcagcggtccactatagtgtggttagtcagtgttagcaatgaaatgatacacacttcgtgagctactatgctacaacgtttacctttt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43663758 |
gcaagtcaaatttcagcggtccactatagtgtggttagtcggtgttagcaatgaaatgatacacacttcgtgagctactatgctacaacgtttacctttt |
43663857 |
T |
|
| Q |
317 |
tggtacaattattttatctgaaattgattaattaattagtgggtttcatcctcaacttccattcattatatttatgctccattgactcgataaagcatgc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43663858 |
tggtacaattattttatctgaaattgattaattaattagtgggtttcatcctcaacttccattcattatatttatgctccattgactcgataaagcatgc |
43663957 |
T |
|
| Q |
417 |
cactttctaaattannnnnnnnnnnnnnnncttggtctccagttagcaatcaagggtgaaattaatttttgatatt |
492 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43663958 |
cactttctaaattattttcttttgttttttcttggtctccagttagcaatcaagggtgaaattaatttttgatatt |
43664033 |
T |
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