View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19425_low_15 (Length: 500)

Name: NF19425_low_15
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19425_low_15
NF19425_low_15
[»] chr2 (17 HSPs)
chr2 (18-500)||(32207124-32207606)
chr2 (380-498)||(32212201-32212319)
chr2 (392-500)||(32118491-32118600)
chr2 (391-500)||(32147582-32147691)
chr2 (393-468)||(32152345-32152420)
chr2 (177-234)||(32212501-32212558)
chr2 (428-500)||(32157558-32157630)
chr2 (391-498)||(32156411-32156518)
chr2 (415-500)||(32182297-32182382)
chr2 (391-500)||(32174187-32174296)
chr2 (391-498)||(32110227-32110334)
chr2 (405-500)||(2821320-2821414)
chr2 (451-498)||(32534228-32534275)
chr2 (415-490)||(32153369-32153444)
chr2 (391-454)||(32182216-32182279)
chr2 (309-351)||(32201068-32201110)
chr2 (309-351)||(32212338-32212380)
[»] chr3 (1 HSPs)
chr3 (20-168)||(46143507-46143647)
[»] chr1 (1 HSPs)
chr1 (23-141)||(12824362-12824481)
[»] chr4 (1 HSPs)
chr4 (20-131)||(30666672-30666782)
[»] chr8 (1 HSPs)
chr8 (135-168)||(7066094-7066127)


Alignment Details
Target: chr2 (Bit Score: 454; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Complemental strand, 32207606 - 32207124
Alignment:
Q  18 ggtaactctagactatacaacttaccaagttagtgctaagtaattaaagcattcaatgtattgattgtaaatactagtataaatatatgaggtgtgatca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32207606 ggtaactctagactatacaacttaccaagttagtgctaagtaattaaagcattcaatgtattgattgtaaatactagtataaatatatgaggtgtgatca 32207507  T
Q  118 caaaagacacacaagttacacagatttacaaagagctttacatcttttacataattaataacaccaacaatcttgagaccggccatgcctccaagtaaag 217  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32207506 cacaagacacacaagttacacagatttacaaagagctttacatcttttacataattaataacaccaacaatcttgagaccggccatgcctccaagtaaag 32207407  T
Q  218 taattaaagagtccccaaaaaatcttttgtttgctctctggcagtttaggtagccttatcgttgttctatgnnnnnnnaaattagttgtgccgacgtgtt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||||||||||||    
T  32207406 taattaaagagtccccaaaaaatcttttgtttgctctctggcagttcaggtagccttatcgttgttctatgtttttttaaattagttgtgccgacgtgtt 32207307  T
Q  318 cgtgtcagtgtcatgtcatgtgttcgtgttggagcctgtgtcggagtctgccgcagtcccttcttcatagctgcctagttcatgttcttctttgacattt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32207306 cgtgtcagtgtcatgtcatgtgttcgtgttggagcctgtgtcggagtctgccgcagtcccttcttcatagctgcctagttcatgttcttctttgacattt 32207207  T
Q  418 tcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctgttgcatcaca 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32207206 tcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctgttgcatcaca 32207124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 380 - 498
Target Start/End: Complemental strand, 32212319 - 32212201
Alignment:
Q  380 cttcatagctgcctagttcatgttcttctttgacattttcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttc 479  Q
    |||||||||| |||||||||||||||||||||| |||||||||||| || || |||||||| || ||||||||||||||||||||||||||||||||||     
T  32212319 cttcatagctacctagttcatgttcttctttgatattttcttcattttttatctcttccttcatgattttcttggcttggagggatttgataaggtcttg 32212220  T
Q  480 tagacattctgttgcatca 498  Q
    ||| |||||||| ||||||    
T  32212219 taggcattctgtagcatca 32212201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 392 - 500
Target Start/End: Original strand, 32118491 - 32118600
Alignment:
Q  392 ctagttcatgttcttctttgacattttcttcattat-taatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctg 490  Q
    ||||||||||||||||||||| |||||||||||| | | || ||||||||||||||||||||||||||||||||||  |||||||||| ||| |||||||    
T  32118491 ctagttcatgttcttctttgatattttcttcattctatcatctcttccttgatcattttcttggcttggagggattcaataaggtcttgtaggcattctg 32118590  T
Q  491 ttgcatcaca 500  Q
    | ||||||||    
T  32118591 tagcatcaca 32118600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 391 - 500
Target Start/End: Original strand, 32147582 - 32147691
Alignment:
Q  391 cctagttcatgttcttctttgacattttcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctg 490  Q
    |||||||||  ||||||||||  |||||||||| | || || |||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  32147582 cctagttcaccttcttctttgttattttcttcaatctttatctcttccttgatcattttcttggcttggaggaatttgataaggtcttgtaggcattctg 32147681  T
Q  491 ttgcatcaca 500  Q
    | ||||||||    
T  32147682 tagcatcaca 32147691  T

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Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 393 - 468
Target Start/End: Original strand, 32152345 - 32152420
Alignment:
Q  393 tagttcatgttcttctttgacattttcttcattattaatgtcttccttgatcattttcttggcttggagggatttg 468  Q
    ||||||||||||| |||||| | |||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  32152345 tagttcatgttctcctttgataatttcttcatttttaatgtcttccttgatcattttcttggcttggaaggatttg 32152420  T

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Target: chr2; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 32212558 - 32212501
Alignment:
Q  177 aacaccaacaatcttgagaccggccatgcctccaagtaaagtaattaaagagtcccca 234  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32212558 aacaccaacaatcttgagaccagccatgcctccaagtaaagtaattaaagagtcccca 32212501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 428 - 500
Target Start/End: Original strand, 32157558 - 32157630
Alignment:
Q  428 taatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctgttgcatcaca 500  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| ||||||||    
T  32157558 taatctcttccttgatcattttcttggcttggaggaatttgataaggtcttgtaggcattctgtagcatcaca 32157630  T

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Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 391 - 498
Target Start/End: Original strand, 32156411 - 32156518
Alignment:
Q  391 cctagttcatgttcttctttgacattttcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctg 490  Q
    |||||||||  ||||||||||||||||||||| || || || ||||||||  ||||||||||  |||||||| ||||||||||||||| ||| |||||||    
T  32156411 cctagttcagattcttctttgacattttcttccttctttatctcttcctttttcattttctttacttggaggaatttgataaggtcttgtaggcattctg 32156510  T
Q  491 ttgcatca 498  Q
    | ||||||    
T  32156511 tagcatca 32156518  T

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Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 415 - 500
Target Start/End: Original strand, 32182297 - 32182382
Alignment:
Q  415 ttttcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctgttgcatcaca 500  Q
    ||||||||||| || |  |||||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||| ||||||||    
T  32182297 ttttcttcattctttacctcttccttgatcattttcttggcttgcaggaatttgataaggtcttgtaggcattctgtagcatcaca 32182382  T

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Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 391 - 500
Target Start/End: Original strand, 32174187 - 32174296
Alignment:
Q  391 cctagttcatgttcttctttgacattttcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctg 490  Q
    |||||||||  ||||||||| |  ||||||||||| || |  |||||||||||||||||||| ||||||||| || | |||||||||| ||| |||||||    
T  32174187 cctagttcaccttcttctttaatgttttcttcattttttacctcttccttgatcattttctttgcttggaggaatattataaggtcttgtaggcattctg 32174286  T
Q  491 ttgcatcaca 500  Q
    | ||||||||    
T  32174287 tagcatcaca 32174296  T

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Target: chr2; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 391 - 498
Target Start/End: Original strand, 32110227 - 32110334
Alignment:
Q  391 cctagttcatgttcttctttgacattttcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctg 490  Q
    ||||| || ||||||||||||  |||||||||  | ||| | ||||||| || ||||||||||||||||||| ||||||||||||||| ||  |||||||    
T  32110227 cctagatcttgttcttctttgctattttcttctctcttactctcttcctggaccattttcttggcttggaggaatttgataaggtcttgtaagcattctg 32110326  T
Q  491 ttgcatca 498  Q
    | ||||||    
T  32110327 tagcatca 32110334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 500
Target Start/End: Complemental strand, 2821414 - 2821320
Alignment:
Q  405 ttctttgacattttcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctgttgcatcaca 500  Q
    ||||||||  ||||||||||| || || |||||||| ||| ||| ||||||||||||| ||||||||||||||| ||| |||| ||| ||||||||    
T  2821414 ttctttgatgttttcttcattctttatctcttccttcatcgttt-cttggcttggaggaatttgataaggtcttgtaggcattttgtagcatcaca 2821320  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 451 - 498
Target Start/End: Original strand, 32534228 - 32534275
Alignment:
Q  451 ttggcttggagggatttgataaggtcttctagacattctgttgcatca 498  Q
    |||||||||||||||||||||||||||| ||| |||||||| ||||||    
T  32534228 ttggcttggagggatttgataaggtcttgtaggcattctgtagcatca 32534275  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 490
Target Start/End: Original strand, 32153369 - 32153444
Alignment:
Q  415 ttttcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctg 490  Q
    ||||||||||| || || || |  ||||| |||||||||||||||||| |||||||||||| || ||| |||||||    
T  32153369 ttttcttcattctttatctcatgtttgatgattttcttggcttggaggaatttgataaggtattgtaggcattctg 32153444  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 454
Target Start/End: Original strand, 32182216 - 32182279
Alignment:
Q  391 cctagttcatgttcttctttgacattttcttcattattaatgtcttccttgatcattttcttgg 454  Q
    |||||||||  ||||||||||| |||||||||||| ||  | ||||||| ||||||||||||||    
T  32182216 cctagttcaccttcttctttgatattttcttcattctttgtctcttcctcgatcattttcttgg 32182279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 32201068 - 32201110
Alignment:
Q  309 cgacgtgttcgtgtcagtgtcatgtcatgtgttcgtgttggag 351  Q
    |||||||| |||||||||||| ||||| |||||||||||||||    
T  32201068 cgacgtgtccgtgtcagtgtcgtgtcaggtgttcgtgttggag 32201110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 32212380 - 32212338
Alignment:
Q  309 cgacgtgttcgtgtcagtgtcatgtcatgtgttcgtgttggag 351  Q
    ||||||||||||||||||||||||||| |||| ||||| ||||    
T  32212380 cgacgtgttcgtgtcagtgtcatgtcaggtgtccgtgtcggag 32212338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 46143507 - 46143647
Alignment:
Q  20 taactctagactatacaacttaccaagttagtgctaagtaattaaagcattcaatgtattgattgtaaatactagtataaatatatgaggtgtgatcaca 119  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       
T  46143507 taactctagactatacaacttactaagttagtgctaagtaattaaagcattcaatgtattgattgtaaatactattataaatatatgaggtgtgatc--- 46143603  T
Q  120 aaagacacacaagttacacagatttacaaagagctttacatcttttaca 168  Q
          |||||||  || |||||||||||||||||||||||||||||||    
T  46143604 -----tacacaagacacgcagatttacaaagagctttacatcttttaca 46143647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 12824481 - 12824362
Alignment:
Q  23 ctctagactatacaacttaccaagttagtgctaagtaattaaagcattcaatgtattgattgtaaatactagtataaatatatgaggtgtgatc-acaaa 121  Q
    ||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||||| | ||||||||||| |||||||||||||||||||||| ||  |    
T  12824481 ctctagactgtacaacttactaagttagtgctaagtagttaaagcattcgatgtatttagtgtaaatactattataaatatatgaggtgtgatctaccca 12824382  T
Q  122 agacacacaagttacacaga 141  Q
    |||||||||| |||||||||    
T  12824381 agacacacaatttacacaga 12824362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 30666672 - 30666782
Alignment:
Q  20 taactctagactatacaacttaccaagttagtgctaagtaattaaagcattcaatgtattgattgtaaatactagtataaatatatgaggtgtgat-cac 118  Q
    |||||||||| | | | |||||| | |||||||||||||||||||||||||||||||| | ||||||||||||| |||||  ||||||||||||||  ||    
T  30666672 taactctagattttgcgacttactaggttagtgctaagtaattaaagcattcaatgtactaattgtaaatactactataa--atatgaggtgtgatgtac 30666769  T
Q  119 aaaagacacacaa 131  Q
    | |||||||||||    
T  30666770 acaagacacacaa 30666782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 7066127 - 7066094
Alignment:
Q  135 acacagatttacaaagagctttacatcttttaca 168  Q
    |||||||| |||||||||||||||||||||||||    
T  7066127 acacagatctacaaagagctttacatcttttaca 7066094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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