View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19425_low_16 (Length: 500)
Name: NF19425_low_16
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 2 - 482
Target Start/End: Original strand, 4260493 - 4260973
Alignment:
| Q |
2 |
aaatatttaagtgattggttaaagcaaggtggaaccaacaatagaagtttaatggtttgggatcttgaagttccagaagattcatttagaggattatttc |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4260493 |
aaatatttgagtgattggttaaagcaaggtggaaccaacaatagaagtttaatggtttgggatcttgaagttccagaagattcatttagagggttatttc |
4260592 |
T |
|
| Q |
102 |
aattatctcgtttggatattgaaaagcttaaggaatttgtagtgtcaaaacaaaagggtactaggaatgagaataaaaatcttcacttgtcaacatttgt |
201 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4260593 |
aattatctcgtttggatatcgaaaagcttaaggaatttgtagtgtcaaaacaaaagggtactaggactgagaataaaaatcttcacttgtcaacatttgt |
4260692 |
T |
|
| Q |
202 |
ggtatctattgcttatgcattggtatgtagaatgaaagcagaaaaacttgagaacaaaaatgttgtgatgggtttgaccatcgattgcaggaatcgttta |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4260693 |
ggtatctattgcttatgcattggtatgtagaatgaaagcagagaaaattgagaacaaaaatgttgtgatgggtttgaatatcgattgcaggaatcgttta |
4260792 |
T |
|
| Q |
302 |
aaaccacctactcctgcaacatattttggaaattgtattggagtaagacttgcaattgttaaaacaaatgagttatttggagaaaatggactaattgtgg |
401 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
4260793 |
gaaccaacgactcctgcaacatattttggaaattgtattggagcaagacttgcaattgttaaaacaagtgagttatttggagaaaatggattaattgtgg |
4260892 |
T |
|
| Q |
402 |
ctgttgaagtgttgagtgaagctttggaaactttaaaagatggagtattgaatggagctgaaaattggtcttcattgttac |
482 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4260893 |
ctgttgaaatgttaagtgaagctttggaaactataaaagatggagtgttgaatggagctgaaaattggtcttcattgttac |
4260973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 4289685 - 4289204
Alignment:
| Q |
1 |
aaaatatttaagtgattggttaaagcaaggtggaaccaacaatagaagtttaatggtttgggatcttgaagttccagaagattcatttagaggattattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4289685 |
aaaatatttaagtgattggttaaagcaaggtggaaccaacaatagaagtttaatggtttgggatcttcaagttccagaagattcatttagaggattattt |
4289586 |
T |
|
| Q |
101 |
caattatctcgtttggatattgaaaagcttaaggaatttgtagtgtcaaaacaaaagggtactaggaatgagaataaaaatcttcacttgtcaacatttg |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||| ||||||| |||| |
|
|
| T |
4289585 |
caattatctcgtttggatatcgaaaagcttaaggaatttgtagtgtcaaaacaaaagggtaataggaacgagaaaaaaaatcttcacctgtcaacttttg |
4289486 |
T |
|
| Q |
201 |
tggtatctattgcttatgcattggtatgtagaatgaaagcagaaaaacttgagaacaaaaatgttgtgatgggtttgaccatcgattgcaggaatcgttt |
300 |
Q |
| |
|
| |||||||| |||||||||| |||||| ||| ||||||||||| || ||||||||||||||| | |||||| ||||| || ||||| | |||||||| |
|
|
| T |
4289485 |
ttgtatctatagcttatgcatgggtatgcagagtgaaagcagaagaaattgagaacaaaaatgctatgatggttttgaatattgattgtcgtaatcgttt |
4289386 |
T |
|
| Q |
301 |
aaaaccacctactcctgcaacatattttggaaattgtattggagtaagacttgcaattgttaaaacaaatgagttatttggagaaaatggactaattgtg |
400 |
Q |
| |
|
| | | || | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||| |||||||||||||| |
|
|
| T |
4289385 |
agatcagccgattcctgcaacatattttggaaattgtattggagcaagacttgcaattgttaaaacaaatgagttattgggggaagatggactaattgtg |
4289286 |
T |
|
| Q |
401 |
gctgttgaagtgttgagtgaagctttggaaactttaaaagatggagtattgaatggagctgaaaattggtcttcattgttac |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4289285 |
gctgttgaagtgttgagtgaagctttggaaactataaaagatggagtgttgaatggagctgaaaattggtcttcattgttac |
4289204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 2 - 482
Target Start/End: Original strand, 4266039 - 4266519
Alignment:
| Q |
2 |
aaatatttaagtgattggttaaagcaaggtggaaccaacaatagaagtttaatggtttgggatcttgaagttccagaagattcatttagaggattatttc |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||| |
|
|
| T |
4266039 |
aaatatttgagtgattggttaaagcaaggtggaaccaacaatagaagtttaatggtctgggatcttcaagtcccagaagattcatttagagggttatttc |
4266138 |
T |
|
| Q |
102 |
aattatctcgtttggatattgaaaagcttaaggaatttgtagtgtcaaaacaaaagggtactaggaatgagaataaaaatcttcacttgtcaacatttgt |
201 |
Q |
| |
|
|||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
4266139 |
aattatctcgttcgaatatcgaaaagcttaaggaatttgtagtgtcaaaacaaaagggtactaggaatgagaataaaaatcttcacctgtcaacttttgt |
4266238 |
T |
|
| Q |
202 |
ggtatctattgcttatgcattggtatgtagaatgaaagcagaaaaacttgagaacaaaaatgttgtgatgggtttgaccatcgattgcaggaatcgttta |
301 |
Q |
| |
|
|||||||| |||||||||| |||||| ||| ||||| ||||| || ||||||||||||||| | |||||| ||||| || ||||| | ||||||||| |
|
|
| T |
4266239 |
tgtatctatagcttatgcatgggtatgcagagtgaaaacagaagaaattgagaacaaaaatgctatgatggttttgaatattgattgtcgtaatcgttta |
4266338 |
T |
|
| Q |
302 |
aaaccacctactcctgcaacatattttggaaattgtattggagtaagacttgcaattgttaaaacaaatgagttatttggagaaaatggactaattgtgg |
401 |
Q |
| |
|
| | || | |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| || ||| ||||||||||||||| |
|
|
| T |
4266339 |
gatcagccgattcctgcaacatattttggaaattgtattggaggaaaacttgcaattgttaaaacaaatgagttattgggggaagatggactaattgtgg |
4266438 |
T |
|
| Q |
402 |
ctgttgaagtgttgagtgaagctttggaaactttaaaagatggagtattgaatggagctgaaaattggtcttcattgttac |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
4266439 |
ctgttgaagtgttgagtgaagctttggaaactttaaaagatggagtgttgaatggagctgaaaattggtcttcatggttac |
4266519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 4298269 - 4297799
Alignment:
| Q |
1 |
aaaatatttaagtgattggttaaagcaaggtggaaccaacaatagaagtttaatggtttgggatcttgaagttccagaagattcatttagaggattattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
4298269 |
aaaatatttaagtgattggttaaagcaaggtggaaccaacaataaaagcttaatggtttgggatcttcaagttccagaagattcatttagagggttattt |
4298170 |
T |
|
| Q |
101 |
caattatctcgtttggatattgaaaagcttaaggaatttgtagtgtcaaaacaaaagggtactaggaatgagaataaaaatcttcacttgtcaacatttg |
200 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| |||||| ||||||||||||| |
|
|
| T |
4298169 |
caattatctcgttcggatatcaaaaagcttaaggaatttgtagtgttaaaacaagagggtactaggaacgagaataaaagtcttcatttgtcaacatttg |
4298070 |
T |
|
| Q |
201 |
tggtatctattgcttatgcattggtatgtagaatgaaagcagaaaaacttgagaacaaaaatgttgtgatgggtttgaccatcgattgcaggaatcgttt |
300 |
Q |
| |
|
| ||||||||| ||||||||||||||||| || ||| |||||||||||||||||||||||||||||| |||||||| ||| |||||| |
|
|
| T |
4298069 |
tactatctattg-----------gtatgtagaatgaaagccgagaaaattgagaacaaaaatgttgtgatgggtttgaatatcgattgtcggactcgttt |
4297981 |
T |
|
| Q |
301 |
aaaaccacctactcctgcaacatattttggaaattgtattggagtaagacttgcaattgttaaaacaaatgagttatttggagaaaatggactaattgtg |
400 |
Q |
| |
|
| | | || | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4297980 |
agatcagccaattcctgcaacatattttggaaattgtattggaggaagacttgcaattgttaaaacaagtgagttatttggagaaaatggactaattgta |
4297881 |
T |
|
| Q |
401 |
gctgttgaagtgttgagtgaagctttggaaactttaaaagatggagtattgaatggagctgaaaattggtcttcattgttac |
482 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
4297880 |
gttgttgaagtgttgagtgaagctttggaaactttaaaagatggagtgttgactggagctgaaaattggtcttcattgttac |
4297799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 69 - 482
Target Start/End: Complemental strand, 4255912 - 4255500
Alignment:
| Q |
69 |
aagttccagaagattcatttagaggattatttcaattatctcgtttggatattgaaaagcttaaggaatttgtagtgtcaaaacaaaagggtactaggaa |
168 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| || ||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4255912 |
aagttcctgaagattcatttagagggttatttgaaatatctcgttcggatatcgaaa-gcttaaggaatttgtagtgtcaaaacaaaagggtactaggaa |
4255814 |
T |
|
| Q |
169 |
tgagaataaaaatcttcacttgtcaacatttgtggtatctattgcttatgcattggtatgtagaatgaaagcagaaaaacttgagaacaaaaatgttgtg |
268 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||| |||||||||| |||| | || |
|
|
| T |
4255813 |
tgagaataaaaatcttcaattgtcaacatttgtggcatctattgcttatgcattggtatgtagaatgaaagccgagaaaattgagaacaagaatgctttg |
4255714 |
T |
|
| Q |
269 |
atgggtttgaccatcgattgcaggaatcgtttaaaaccacctactcctgcaacatattttggaaattgtattggagtaagacttgcaattgttaaaacaa |
368 |
Q |
| |
|
|||||||| | ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| |
|
|
| T |
4255713 |
atgggtttaaatatcgattgcaggaatcgtttaggagcacctactcctgcaacatattttggaaattgtattggaacatgacttgaaattgttaaaacag |
4255614 |
T |
|
| Q |
369 |
atgagttatttggagaaaatggactaattgtggctgttgaagtgttgagtgaagctttggaaactttaaaagatggagtattgaatggagctgaaaattg |
468 |
Q |
| |
|
||||||||| || ||| |||||||||| ||||| |||||||||||||||||| |||||||||| |||||||||| ||| |||||||||||||||||||| |
|
|
| T |
4255613 |
gtgagttattgggggaagatggactaatggtggccgttgaagtgttgagtgaaactttggaaacattaaaagatgtagtgttgaatggagctgaaaattg |
4255514 |
T |
|
| Q |
469 |
gtcttcattgttac |
482 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
4255513 |
gtcttcatggttac |
4255500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 4284986 - 4284521
Alignment:
| Q |
1 |
aaaatatttaagtgattggttaaagcaaggtggaaccaacaatagaagtttaatggtttgggatcttgaagttccagaagattcatttagaggattattt |
100 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
4284986 |
aaaatatttgagggattggtcaaagcaaggtggaaccaacaatagaagcttaatggtttgggatcttcaagttccagaagattcatttagagggttattt |
4284887 |
T |
|
| Q |
101 |
caattatctcgtttggatattgaaaagcttaaggaatttgtagtgtcaaaacaaaagggtactaggaatgagaataaaaatcttcacttgtcaacatttg |
200 |
Q |
| |
|
|||| ||||||||||||||| | | |||||||||||||| |||||||||||||||||| ||||||||||||||| ||| | |||||||||||||| |||| |
|
|
| T |
4284886 |
caatgatctcgtttggatatcgtatagcttaaggaatttttagtgtcaaaacaaaaggctactaggaatgagaaaaaataccttcacttgtcaacttttg |
4284787 |
T |
|
| Q |
201 |
tggtatctattgcttatgcattggtatgtagaatgaaagcagaaaaacttgagaacaaaaatgttgtgatgggtttgaccatcgattgcaggaatcgttt |
300 |
Q |
| |
|
| ||||| || |||||||| | ||||| ||||||||||| || || ||||||||||||||| | |||||| ||||| || ||||| ||||| |||| |
|
|
| T |
4284786 |
ttgtatccatagcttatgcctgggtatacagaatgaaagctaaagaaattgagaacaaaaatgctctgatggctttgaatattgattgtcggaattgttt |
4284687 |
T |
|
| Q |
301 |
aaaaccacctactcctgcaacatattttggaaattgtattggagtaagacttgcaattgttaaaacaaatgagttatttggagaaaatggactaattgtg |
400 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| || || |||| ||||| ||| |
|
|
| T |
4284686 |
agaaccaccgactcctgcaacatattttggaaattgtattggaggaagacttgcaattgttgaaacaagtgagttattggggaaagatgggctaatcgtg |
4284587 |
T |
|
| Q |
401 |
gctgttgaagtgttgagtgaagctttggaaactttaaaagatggagtattgaatggagctgaaaat |
466 |
Q |
| |
|
|| ||||||||| | ||||||||||||||||||||||||||| ||| || ||||||||||||||| |
|
|
| T |
4284586 |
gcggttgaagtgctaggtgaagctttggaaactttaaaagatgtagtgttaaatggagctgaaaat |
4284521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 258 - 465
Target Start/End: Complemental strand, 4257989 - 4257781
Alignment:
| Q |
258 |
aaaatgttgtgatgggtttgaccatcgattgcaggaa-tcgtttaaaaccacctactcctgcaacatattttggaaattgtattggagtaagacttgcaa |
356 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4257989 |
aaaatgttgtgatgggtttgactatcgattgcaggaaatcgtttagaacaaccgactcctgcaacatattttggaaattgtattggagcaagacttgcaa |
4257890 |
T |
|
| Q |
357 |
ttgttaaaacaaatgagttatttggagaaaatggactaattgtggctgttgaagtgttgagtgaagctttggaaactttaaaagatggagtattgaatgg |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4257889 |
ttgttaaaacaaatgagttatttggagaaaatggactaattgtggttgttgaagtgttgagtgaagctttggaaactttaaaagatggagtgttgaatgg |
4257790 |
T |
|
| Q |
457 |
agctgaaaa |
465 |
Q |
| |
|
||||||||| |
|
|
| T |
4257789 |
agctgaaaa |
4257781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 4258388 - 4258319
Alignment:
| Q |
190 |
gtcaacatttgtggtatctattgcttatgcattggtatgtagaatgaaagcagaaaaacttgagaacaaa |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4258388 |
gtcaacatttgtggtatctattgcttatgcattggtatgtagactgaaagcagaaaaacttgagaacaaa |
4258319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 278
Target Start/End: Original strand, 4259465 - 4259551
Alignment:
| Q |
199 |
tgtggtatctattgcttatgcattggtatgta-------gaatgaaagcagaaaaacttgagaacaaaaatgttgtgatgggtttga |
278 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||| ||| ||||||||||||| |||||| |||||||| |
|
|
| T |
4259465 |
tgtggtatctattgcttatgcattggtatttactatttagaatgaaagcagagaaaattgagaacaaaaaagttgtgtcgggtttga |
4259551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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