View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_17 (Length: 485)
Name: NF19425_low_17
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 37862979 - 37863459
Alignment:
| Q |
1 |
caacattcttta-ttcaacatctaaacatttgtttgggttagtatttaccagctgtgaacaaacttaatattgcgaaatttctttggttaaaactaa-gt |
98 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
37862979 |
caacattctttacttcaacaactaaacatttgtttgggttagtatttaccagctgtgaacaaacttaatattgtgaaatttctttggttaaaactaaagt |
37863078 |
T |
|
| Q |
99 |
tcaaagtgaagtgacttatgcttagacacatatacaaacaaacagctcttcatcacttctactcaaacaaggatttagagacaaaatatattttagttcg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37863079 |
tcaaagtgaagtgacttatgcttagacacatatacaaacaaacaactcttcatcatttctactcaaacaaggatttagagacaaaatatattttagttcg |
37863178 |
T |
|
| Q |
199 |
aaacaataaaataattccgttccaacc-----aaccaaacctgatttaaaaggttgcaattgcaaattgcttccaaacataaaacaacaacaacaactct |
293 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37863179 |
aaacaataaaataattccgttccaaccaaccaaaccaaacctgatttaaaaggttgcaattgcaaattgcttccaaacataa---aacaacaacaactct |
37863275 |
T |
|
| Q |
294 |
agtaatttattttcgagataatcataatgattattttctagtaatccaatgtttttcatgcgaacctgaattgnnnnnnnnnnnnntagtgaacatttaa |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37863276 |
agtaatttattttcgagataatcataatgattattttctagtaatccaatgtttttcatgcgaacctgaattgaaaaaacaaaaaatagtgaacatttaa |
37863375 |
T |
|
| Q |
394 |
atgacacaagaatattgaattgaaaccaatggcatgtaccaaaagaggagtagtacctagcattaatttgccaccatattcttc |
477 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
37863376 |
atgacacaagaatattgaattgaaaccaatggcatgtaccaaaagaggagtagtacctagcattaatttgccaccattttcttc |
37863459 |
T |
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