View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_18 (Length: 479)
Name: NF19425_low_18
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 469
Target Start/End: Complemental strand, 41479867 - 41479415
Alignment:
| Q |
18 |
ttcattacataagattacaacttcaagaactagaactagcataagtggacttaaagtcttctaaatgcttctctgaagagtccaataagtaaatcaaccc |
117 |
Q |
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| T |
41479867 |
ttcattacataagattacaacttcaagaactagaactagcataagtggacttaaagtcttctaaatgcttctctgaagagtccaataagtaaatcaaccc |
41479768 |
T |
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| Q |
118 |
cgttgtaaacttcatccacacgaaagttgagttcaactactgatannnnnnnnatcttaagtagttcaatacgaatttctcctataagcgacgaagggct |
217 |
Q |
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| T |
41479767 |
cgttgtaaacttcatccacacgaaagttgagttcaactactgat-ttttttttatcttaagtagttcaatacgaatttctcctataagcgacgaagggct |
41479669 |
T |
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| Q |
218 |
cgtgagggaacagtttccttctca--gagaatggtagttgccacactaatgtctgaagatctttcttgaagctaatttttaaaaatacagttcaaactaa |
315 |
Q |
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| T |
41479668 |
cgcgagggaacagtttccttctcaaagagaatggtagtcgccacactaatgtctgaagatctttcttgaagctaatttttaaaaatacagttcaaactaa |
41479569 |
T |
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| Q |
316 |
tgatttcttattgtttggaaataatgtaatgatggataatataatgatttatttctatggccaggtacgatttcaaatgaatttaacttaaatgtttcaa |
415 |
Q |
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| T |
41479568 |
tgatttcttattgtttggaaataatgtaatgatggataatataatgatttatttctatggccaggtatgatttcaaatgaatttaacttaaatgtttcaa |
41479469 |
T |
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| Q |
416 |
gacaaaaatttaaaccatactacaaagagagacaattgataccacatgcctttg |
469 |
Q |
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| T |
41479468 |
gacaaaaatttaaaccaaactacaaagagagacaattgataccacatgcctttg |
41479415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 377 - 460
Target Start/End: Complemental strand, 41487528 - 41487445
Alignment:
| Q |
377 |
caggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccatactacaaagagagacaattgataccac |
460 |
Q |
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| T |
41487528 |
caggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccagactacaacaggagacgattgataccac |
41487445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 460
Target Start/End: Complemental strand, 41486677 - 41486578
Alignment:
| Q |
354 |
atataatgatttatttctatggccaggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccatactac-aaagagagacaatt |
452 |
Q |
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| T |
41486677 |
atataatgctttatttttaggttcaggtacgatttcaaatgaatttaactt--------caagacaaaaatttaaaccagactacaaaagggagacaatt |
41486586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 390 - 432
Target Start/End: Complemental strand, 40753830 - 40753788
Alignment:
| Q |
390 |
aaatgaatttaacttaaatgtttcaagacaaaaatttaaacca |
432 |
Q |
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| T |
40753830 |
aaatgaatttaacttaaatgtttcgagacaaaaatttaaacca |
40753788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 41472428 - 41472357
Alignment:
| Q |
171 |
atcttaagtagttcaatacgaatttctcctataa-gcgacgaagggctcgtgagggaacagtttccttctca |
241 |
Q |
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| T |
41472428 |
atctaaagtagtacactacgaatttctcctataatgtgacgaaggtctggcgagggaacaatttccttctca |
41472357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 241
Target Start/End: Original strand, 16406879 - 16407054
Alignment:
| Q |
65 |
gacttaaagtcttctaaatgcttctctgaaga---gtccaataagtaaatcaaccccgttgtaaacttcatccacacgaaagttgagttcaactactgat |
161 |
Q |
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||||||||| |||| |||||||||||||||| ||||| |||||||||||| || | |||| | ||| ||||||||||||||||||| |||||| |
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| T |
16406879 |
gacttaaagctttcttaatgcttctctgaagaagagtccagtaagtaaatcaagcctgctgtagatttcgtccacacgaaagttgagtt---ctactg-- |
16406973 |
T |
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| Q |
162 |
annnnnnnnatcttaagtagttcaatacgaatttctcctat-aagcgacgaagggctcgtgagggaacagtttccttctca |
241 |
Q |
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| T |
16406974 |
aatttttttatctaaagtagttcactacgaatttctcctatgatgtgacgaaggtctggtgagggaacaatttccttctca |
16407054 |
T |
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