View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_19 (Length: 478)
Name: NF19425_low_19
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 225 - 467
Target Start/End: Complemental strand, 49081983 - 49081741
Alignment:
| Q |
225 |
gtggacgaagaagcaaacaaaagagaatagttttttcaaactactttaaatgcttaatagccgccttacagccacgaaaactaaatatcttattgctttc |
324 |
Q |
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| T |
49081983 |
gtggaggaagaagaaaacaaaagagaatagttttttcaaactactttaaatgcttaatagccgccttacagccacgaaaactaaatatcttattgctttc |
49081884 |
T |
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| Q |
325 |
tttgtttttgtggtttcagattcaaccagatctatttctcttctctccgcttccttcattcattcctttgtctttactctttgctcacgtgcctcctttt |
424 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49081883 |
tttgtttttgtggtctcagattcaaccagatctatttctcttctctccgcttccttcattcattcctttgtctttactctttgctcacgtgcctcctttt |
49081784 |
T |
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| Q |
425 |
ccaccatccatttcacccttctgggaccaacacgtgcctctct |
467 |
Q |
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| T |
49081783 |
ccaccatccatttcacccttctgggaccaacacgtgcctctct |
49081741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 49082171 - 49081997
Alignment:
| Q |
18 |
catcgtgggaggaacaaacttattgttatgatcacccattctttctcaaatgatagtaaattaattgaatggaaaacaaaaaccgcatcaacaaacaaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49082171 |
catcgtgggaggaacaaacttattgttatgatcacccattctttctcaaatgatagtaaattaattgaatggaaaacaaaaaccgcatcaacaaacaaga |
49082072 |
T |
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| Q |
118 |
gaacgaaatcgtatgtatgtatctgttagttagctggagtcttaagtaagtaagttgaatgaatataacaaaatatctg |
196 |
Q |
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| T |
49082071 |
gaacgaaatcgtat----gtatctgttagttagctggagtcttaagtaagtaagttgaatgaatataacaaaatatctg |
49081997 |
T |
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