View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_20 (Length: 472)
Name: NF19425_low_20
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 543211 - 543685
Alignment:
| Q |
1 |
tattccatgcaaaattaatgaaaaggaaaagaagatgaagtgaatataaaacccaatcaaaagccacgatatagaggttggtgaccgtcaatggaaggca |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
543211 |
tattccatgctaaattaatgaaaaggaaaagaagatgaagtgaatataaagcccaatcaaaagccacgatacagaggttggtgaccgtcaatggaaggca |
543310 |
T |
|
| Q |
101 |
ctagagaggtggaaagata----------ttgttgggcaaatgagaattaaaaaacaaagtaattgaattgcaagctcactcttttacggactcgtgcga |
190 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
543311 |
ctagagaggtggaaagatactcataaatattgttgggcaaatgagaattaaaaaacaaagtaattgaattgcaagctcactcttttacggactcgtgcga |
543410 |
T |
|
| Q |
191 |
tttgcacgacnnnnnnngtcgtgcacaatagcatttttcataataaaaactagagctgtgttatatggtacgactccctttccgacgaatttgcacgaca |
290 |
Q |
| |
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|||||| ||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
543411 |
tttgcatgactttttttgtcgtgcacaatagcatttttcataataaaaactagagttgtgctatatggtacgactccctttccgatgaatttgcacgaca |
543510 |
T |
|
| Q |
291 |
cgctactacacataatttgctcaatgaatagtcttgaatattgatgctagttcatcggtcttaatagtaaaacaataaggtaaatactaaaacaaaaaat |
390 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
543511 |
cgctactacacataatttgctcaatgaataaccttgaatattgatgttagtttatcagtcttaatagtaaaacaataaggtaaacactaaaacaaaaaat |
543610 |
T |
|
| Q |
391 |
aagcatcaatattctttgttgctatggtcactatgatcatcaatatcactacactccaaagcaatatattcttcg |
465 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
543611 |
aagcatcaatattctttgttgctatggtcactatgatcatcaatatcactacactccaaagcagtattttcttcg |
543685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 241 - 465
Target Start/End: Original strand, 40720710 - 40720934
Alignment:
| Q |
241 |
tagagctgtgttatatggtacgactccctttccgacgaatttgcacgacacgctactacacataatttgctcaatgaatagtcttgaatattgatgctag |
340 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| || ||||||||||||||| |
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|
| T |
40720710 |
tagagctgtgctatatggtacgactccctttccgacgaatttgcacgacacgctgctacacacaatttgctcaatgaatactcctgaatattgatgctaa |
40720809 |
T |
|
| Q |
341 |
ttcatcggtcttaatagtaaaacaataaggtaaatactaaaacaaaaaataagcatcaatattctttgttgctatggtcactatgatcatcaatatcact |
440 |
Q |
| |
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|| ||| | |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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|
| T |
40720810 |
tttatctatattaatagtaaaacaataaagtaaataccgaaacaaaaaataagcatcaatattctttgttgctatggtcattatgatcatcaataccact |
40720909 |
T |
|
| Q |
441 |
acactccaaagcaatatattcttcg |
465 |
Q |
| |
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||||||||||||| ||| ||||||| |
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|
| T |
40720910 |
acactccaaagcagtattttcttcg |
40720934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 5e-91; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 244 - 465
Target Start/End: Original strand, 16085698 - 16085919
Alignment:
| Q |
244 |
agctgtgttatatggtacgactccctttccgacgaatttgcacgacacgctactacacataatttgctcaatgaatagtcttgaatattgatgctagttc |
343 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16085698 |
agctgtgctatatggtacgactccctttccgacgaatttgcacgacacgctgctacacataatttgctcaatgaatagccttgaatattgatgctagttt |
16085797 |
T |
|
| Q |
344 |
atcggtcttaatagtaaaacaataaggtaaatactaaaacaaaaaataagcatcaatattctttgttgctatggtcactatgatcatcaatatcactaca |
443 |
Q |
| |
|
||| || |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
16085798 |
atctgtattaatagtaaaacaataaagtaaatactaaaacaaaaaataagtatcaatattctttgttgctatggtcactatgatcatcaataaaactacc |
16085897 |
T |
|
| Q |
444 |
ctccaaagcaatatattcttcg |
465 |
Q |
| |
|
|||||||||| ||| ||||||| |
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|
| T |
16085898 |
ctccaaagcagtattttcttcg |
16085919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 243 - 449
Target Start/End: Original strand, 32722215 - 32722422
Alignment:
| Q |
243 |
gagctgtgttatatggtacgactccctttccgacgaatttgcacgacacgctactacacataatttgctcaatgaatagtcttgaatattgatgctagtt |
342 |
Q |
| |
|
|||||||| ||||| | |||| ||||||||| |||||||| ||||||||||| |||||| |||||| |||||||||| ||| ||||||||| |||||| |
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|
| T |
32722215 |
gagctgtgctatatagcacgattccctttccaacgaatttacacgacacgctgatacacacaatttgttcaatgaataaccttaaatattgatactagtt |
32722314 |
T |
|
| Q |
343 |
catcggtct--taatagtaaaacaataaggtaaatactaaaacaaaaaataagcatcaatattctttgttgctatggtcactatgatcatcaatatcact |
440 |
Q |
| |
|
||| | | ||| ||||||||||||| ||||||||||||| ||||||||||| |||||||||||| |||||||| ||||| |||||||| ||| |||| |
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|
| T |
32722315 |
tatctatatactaa-agtaaaacaataaagtaaatactaaaataaaaaataagcttcaatattctttattgctatgatcactgtgatcatctataccact |
32722413 |
T |
|
| Q |
441 |
acactccaa |
449 |
Q |
| |
|
|||||||| |
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|
| T |
32722414 |
tcactccaa |
32722422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 35753202 - 35753140
Alignment:
| Q |
1 |
tattccatgcaaaattaatgaaaaggaaaagaagatgaagtgaatataaaacccaatcaaaag |
63 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| ||||||||||||||| |||| |||||| |
|
|
| T |
35753202 |
tattccatgcaaaattaaagaaaatgaaaagaagacgaagtgaatataaaaaccaagcaaaag |
35753140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 35752252 - 35752210
Alignment:
| Q |
117 |
atattgttgggcaaatgagaattaaaaaacaaagtaattgaat |
159 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||||||||| |
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|
| T |
35752252 |
atattgttgggcatatgagaattaaaaagcacagtaattgaat |
35752210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 242 - 416
Target Start/End: Complemental strand, 52769382 - 52769207
Alignment:
| Q |
242 |
agagctgtgttatatggtacgactccctttccgacgaatttgcacgacacgctactacacataatttgctcaatgaatagtcttgaatattgatgctagt |
341 |
Q |
| |
|
|||| |||||||||| | ||| || ||||| |||||||||||||||||||||| ||||||| || |||||||||||||| ||| |||| |||| ||||| |
|
|
| T |
52769382 |
agagttgtgttatatagcacgtctaccttttcgacgaatttgcacgacacgctgctacacacaacttgctcaatgaataaccttaaatactgatactagt |
52769283 |
T |
|
| Q |
342 |
tcatcggtct--taatagtaaaacaataaggtaaatactaaaacaaaaaataagcatcaatattctttgttgctatg |
416 |
Q |
| |
|
| ||| | | ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
52769282 |
ttatccatatactaa-agtaaaacaataaagtaaatactaaaacaaaaaataagcatcaatattctttattgctatg |
52769207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 115 - 233
Target Start/End: Original strand, 26182648 - 26182765
Alignment:
| Q |
115 |
agatattgttgggcaaatgagaattaaaaaacaaagtaattgaattgcaagctcactcttttacggactcgtgcgatttgcacgacnnnnnnngtcgtgc |
214 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||| || ||||| ||||||||||| ||||||| |
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|
| T |
26182648 |
agatattgttgggcaaatcagaattaaaaaacacagtaattgaatggcaagctcactcttataccgattcgtgtgatttgcacga-tttttttgtcgtgc |
26182746 |
T |
|
| Q |
215 |
acaatagcatttttcataa |
233 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
26182747 |
acactagcatttttcataa |
26182765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 26182534 - 26182617
Alignment:
| Q |
1 |
tattccatgcaaaattaatgaaaaggaaaaga---agatgaagtgaatataaaacccaatcaaaagccacgatatagaggttgg |
81 |
Q |
| |
|
||||||||||||||| | |||| |||||||| ||||||| ||||||||||| |||| ||||||| |||||||||||||||| |
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|
| T |
26182534 |
tattccatgcaaaatataagaaagggaaaagaagaagatgaattgaatataaaaaccaaacaaaagctacgatatagaggttgg |
26182617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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