View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_24 (Length: 450)
Name: NF19425_low_24
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Complemental strand, 36901842 - 36901418
Alignment:
| Q |
17 |
tattctactgcaacaagcaatacattttgtttgcttgagttagtgctacggagggcagttggtgcttcgattagaatttctttcaccatttcatatatgc |
116 |
Q |
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| T |
36901842 |
tattctactgcaacaagcaatacattttgtttgcttgagttagtactacggagggcagttggtgcttcgattagaatttctttcaccatttcatatatgc |
36901743 |
T |
|
| Q |
117 |
catttctagctgcaaccaaaattggtgccttctccttcacgtatgccattttgtctcgttcacttttttcttcaatcatcctgcttgttccaactgtcac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36901742 |
catttctagctgcaaccaaaattggtgccttctccttcacatatgccattttgtctcgttcacttttttcttcaatcatcctgcttgttccaactgtcac |
36901643 |
T |
|
| Q |
217 |
tgtcaattcaaactatggagggttaaaatgccattaatcttctttgtatatattaccatccgtttcaaaatagcaatattaccaaaatattttcatggat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36901642 |
tgtcaattcaaactatggagggttaaaatgccattaatcttctttgtatatattaccatccgtttcaaaatagcaatattaccataatattttcatggat |
36901543 |
T |
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| Q |
317 |
tagagagaatgtacagaggagagattagattcatcatggaaagtgttagataataagatttagcttatgttattaggccttttatgtttatcagttagta |
416 |
Q |
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| T |
36901542 |
tagagagaatgtacagaggagagattagattcatcatggaaagtgttagataataagatttagcttatgttattaggccttttatctttatcagttagta |
36901443 |
T |
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| Q |
417 |
gaatccattaggtttgtagtattat |
441 |
Q |
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| T |
36901442 |
gaatccattaggtttgtaatattat |
36901418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 36892811 - 36892691
Alignment:
| Q |
23 |
actgcaacaagcaatacattttgtttgcttgagttagtgctacggagggcagttggtgcttcgattagaatttctttcaccatttcatatatgccatttc |
122 |
Q |
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|||||||||||||||||||||| ||| |||||| ||||| || | | |||| ||||| ||| ||||||||||| || ||||||||| ||| |||||| |
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| T |
36892811 |
actgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtacttttattagaatttcgttaaccatttcaactattccatttt |
36892712 |
T |
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| Q |
123 |
tagctgcaaccaaaattggtg |
143 |
Q |
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| T |
36892711 |
ttgctgcaaccaaaaatggtg |
36892691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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