View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_25 (Length: 439)
Name: NF19425_low_25
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 419
Target Start/End: Original strand, 28381272 - 28381676
Alignment:
| Q |
15 |
agagttgatattttacacgactgggtgattgtaatgcatatacatcaaccattaatttgataatttatcaatagttaatgtgatttattttactttctaa |
114 |
Q |
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| T |
28381272 |
agagttgatattttacacgactgttttattgtaatgcatatacatcaaccattaatttgataatttatcaatagttaatgtgatttattttactttctaa |
28381371 |
T |
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| Q |
115 |
agtggggtggctgatatataaataattaaatgcttactttttatgttcacaaagaacttttgtaactcatttcttaatttaaccatgaactatgcctttt |
214 |
Q |
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| T |
28381372 |
agtggggtggctgatatataaataattaaatgcttactttttatgttcacaaagaacttttgtaacatatttcttaatttaaccatgaactatgcctttt |
28381471 |
T |
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| Q |
215 |
ttcttgccttattttacaatactcatgacannnnnnntacctttgatagcaaattttattgctatgtctctcccattatctctccctctcatttcattaa |
314 |
Q |
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| T |
28381472 |
ttcttgccttattttacaatactcatgacaccccccctacctttgatagcaaattttattgctatgtctctcccattatctctccctctcatttcattaa |
28381571 |
T |
|
| Q |
315 |
aatgacttttttagagtgggtgaggaagaaaaatatgcaatctatcaacatggtttggtatagttatttagaatcctattccagctatgagtgtaaaaat |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28381572 |
aatgacttttttagagtgggtgaggaagaaaaatatgcaatctatcaacatggtttggtatagttatttagaatcctattccatctatgagtgtaaaaat |
28381671 |
T |
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| Q |
415 |
ggtcc |
419 |
Q |
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| T |
28381672 |
ggtcc |
28381676 |
T |
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