View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_27 (Length: 414)
Name: NF19425_low_27
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 10 - 398
Target Start/End: Original strand, 34811036 - 34811440
Alignment:
| Q |
10 |
ataatacttgcaaaggatatcatcatatatagttgattagaaatagggaataaattatgtggaatcac--------------acttgtcagtagattgtt |
95 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34811036 |
ataatactagcaaaggatatcatcatatatagttgattagaaatagggaataaattatgtggaatcacactttctttttcacacttgtcagtagattgtt |
34811135 |
T |
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| Q |
96 |
ccaattctgcaatctgcaacaggtaaaaaagtattactgaattttcactttaaagctcattttctgttcttagagtagtatattaaattattcattgtac |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
34811136 |
ccaattctgcaatctgcaacaggtaaaaaagtattactgaattttcacttaaaagctcattttctgttcttagagtagtatgttaaattattaattgtac |
34811235 |
T |
|
| Q |
196 |
ctgtttctccaacagctcattttccgttcttagagaaagttcctgttcgaagtggcaaagat--nnnnnnncaaagagttaacaaaccatgtatgtggat |
293 |
Q |
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| T |
34811236 |
ctgtttctccaacagctcattttccgttcttagagtaagttcctgttcgaagtggcaaagataaaaaaaaacaaagagttaacaaaccatgtatgtggat |
34811335 |
T |
|
| Q |
294 |
tttattttaccatgtttgtactttatcagagatattttagagtgaaatgctaggtgcagcacatatgattaaatgagatctatttgaatttcaatcaata |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34811336 |
tttattttaccatgtttgtactttatcagagatattttagagtgaaatgctaggtgcagcacatatgattaaatgagatctatttgaatttcaatcaata |
34811435 |
T |
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| Q |
394 |
aaatg |
398 |
Q |
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| T |
34811436 |
aaatg |
34811440 |
T |
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