View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_29 (Length: 405)
Name: NF19425_low_29
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_29 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 405
Target Start/End: Original strand, 17127737 - 17128131
Alignment:
| Q |
19 |
agacttgggataagtcagattatttgtggtacatgacagagtaagaatctgtcaacttcttaaacgcaacgagtaattggaatgctaatctattgagtat |
118 |
Q |
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| T |
17127737 |
agacttgggataagtcagattatttgtggtacatgacagagtaagaatctgtcaacttcttaaatgcaacgagtaattggaatgctaatctattgagtat |
17127836 |
T |
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| Q |
119 |
ttattgata-------tcgttatccttcttcagtgtcaacatcagtcctaatgaaggttttataaagaatggccaaaatcccgttcttaccgccatgtca |
211 |
Q |
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| T |
17127837 |
ttattgatacttaaaattgttatccttcttcagtgtcaacatcagtcctaatgaaggttttataaagaatggccaaaatcccgttcttaccgccatgtca |
17127936 |
T |
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| Q |
212 |
gctggccatgttctgcatgtttttattaacggtcaattttggggtaagcatgcctatttttctaagcatttttctattaggaaaattccaattttacata |
311 |
Q |
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| T |
17127937 |
gctggccatgttctgcatgtttttattaacggtcaattttggggtaagcatgcctattttgctaagcatttttctattaggaaaattccaattttacata |
17128036 |
T |
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| Q |
312 |
ccagaaatacttattagtatgaaatccagagataacatattt-ttnnnnnnnnnngttatcgtactaaatagcaactctctttacattttcatct |
405 |
Q |
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| T |
17128037 |
ccagaaatacttattagcacgaaatccagagataacatatttaaaaaaaaaaaaagttatcgtactaaatagcaactctctttacattttcatct |
17128131 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 5231982 - 5232034
Alignment:
| Q |
131 |
ttatccttcttcagtgtcaacatcagtcctaatgaaggttttataaagaatgg |
183 |
Q |
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| T |
5231982 |
ttatccattttcagtgtcaacattagtcctagtgaaagttttattaagaatgg |
5232034 |
T |
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