View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19425_low_3 (Length: 749)
Name: NF19425_low_3
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 329
Target Start/End: Original strand, 4310194 - 4310513
Alignment:
| Q |
11 |
acatcatcaaccaaccaataaaaaaccttgtagaatttttatggtacagatctagtttcattcctagattaaaattagtccaacattcaattttatttta |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4310194 |
acataatcaaccaaccaataaaaaaccttgtagaatttttatggtacagatctagtttcattcttagattaaaattagtccaacattcaattttatttta |
4310293 |
T |
|
| Q |
111 |
tgcatacggttaattaaatgccattggaagcagaactatatctctctaattaagcatgctggaaccttaaaaagttaaacagcaaaagattcctaatgct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4310294 |
tgcatacggttaattaaatgccattggaagcagaactatatctctctaattaagcatgctggaaccttaaaaagttaaacagcaaaagattcctaatgct |
4310393 |
T |
|
| Q |
211 |
tacaaacacttatatgaacatacccagcaaaacatcaattttatgttcttcaggttatcctagaaatcacattaaagaagaagaaaagataatcaaccaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4310394 |
tacaaacacttatatgaacatacccagcaaaacatcaattttatgttcttcaggttatcctagaaatcacattaaagaagaagaaaagataatcaaccaa |
4310493 |
T |
|
| Q |
311 |
atccccta-tggttcattat |
329 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
4310494 |
atcccctactggttcattat |
4310513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 4252385 - 4252284
Alignment:
| Q |
187 |
aaacagcaaaagattcctaatgcttacaaacacttatatgaacatacc-cagcaaaacatcaattttatgt-tcttcaggttatcctagaaatcacatta |
284 |
Q |
| |
|
||||| ||||||| || ||||||||||||||||| | ||||||||||| ||| |||||||||||||| ||| ||||||| ||||||| |||||||||| |
|
|
| T |
4252385 |
aaacaacaaaagactcttaatgcttacaaacactaaaatgaacataccacag-aaaacatcaatttt-tgtgtcttcagattatcct-taaatcacattg |
4252289 |
T |
|
| Q |
285 |
aagaa |
289 |
Q |
| |
|
||||| |
|
|
| T |
4252288 |
aagaa |
4252284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University