View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_31 (Length: 398)
Name: NF19425_low_31
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 15 - 317
Target Start/End: Complemental strand, 31134253 - 31133954
Alignment:
| Q |
15 |
gacatcatcgttgttaccccctagtcctatatcacctagacttaaagttggtatgtatattcacccttctataggnnnnnnnnnactcagatttagtttt |
114 |
Q |
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| T |
31134253 |
gacatcatcgttgttactgcctagtcctatatcacctagacttaaagttggtatgtatattcacccatctacaggttttt----actcagatttagtttt |
31134158 |
T |
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| Q |
115 |
cccacgtatagaa-aataaaagtgcaaacctaggctttggattcatatgcaggaattatttttgtcagaatatttgttttactaatatgaacaaaattct |
213 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31134157 |
cccacgtatagaataataaaagtgcaaacctaggctttgaattcatatgcaggaattatttttgtcagaatatttgttttactaatatgaacaaaattct |
31134058 |
T |
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| Q |
214 |
gctgtgtatagtttgcagtaatggtacacattgtcccaatgccactgctgacaatagctcaattatattatccccggcaccagcaccagcaccaacaccg |
313 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |
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| T |
31134057 |
gctgtatatagtttgcagtaatggtacacattgtcccaatgccactgctgacaatagctcaattacattatcctcggcaccagcaccaacaccaacaccg |
31133958 |
T |
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