View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_32 (Length: 398)
Name: NF19425_low_32
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 12 - 382
Target Start/End: Complemental strand, 41231036 - 41230666
Alignment:
| Q |
12 |
agagacagaggaaaagcgaccaatttggagaatggtcggtcgagtgaagctgatctaacagaaaactgaacataaaacccgtaaagcttccagaaggagc |
111 |
Q |
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| T |
41231036 |
agagacagaggaaaagcgaccaatttggagaatggtcggtcgagtgaagctgatctaacagaaaactgaacataaaacccgtaaagcttccagaaggagc |
41230937 |
T |
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| Q |
112 |
tccttcctgcaaaattcatacgcttgataactttcttgcatccctcccttcaaggtagatttttaaggagatgcagcagcttagagtagatttaatcaac |
211 |
Q |
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| T |
41230936 |
tccttcctgcaaaattcatacgcttgataactttcttgcatccctcccttcaaggtagatttttaaggagatgcagcagcttagagtagactcaatcaac |
41230837 |
T |
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| Q |
212 |
cgattactactagaagaaattttaaaacatcagaaagaaggnnnnnnnnnnngaataaaagggaattttagcaatttccttcttgaagttgctgggatga |
311 |
Q |
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| T |
41230836 |
cgattactactagaagaaattttaaaacattagaaagaaggaaaaaaaaaaagaataaaagggaattttagcaatttccttcttgaagttgctgggatga |
41230737 |
T |
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| Q |
312 |
aagcttacaagagaaaatatcaaattgtggagaatagtcaaacttgcatgtgcaagtattgatgcattttt |
382 |
Q |
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| T |
41230736 |
aagcttacaagagaaaatatccaatagtggagaatactcaaacttgcatgtgcaagtattgatgcattttt |
41230666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 6110339 - 6110308
Alignment:
| Q |
55 |
gtgaagctgatctaacagaaaactgaacataa |
86 |
Q |
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| T |
6110339 |
gtgaagctgatctaacagaaaactgaacataa |
6110308 |
T |
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