View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_33 (Length: 397)
Name: NF19425_low_33
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 2935110 - 2935490
Alignment:
| Q |
1 |
attcaaacatgagttctctagagtaattcatttgtcgacctaaacttattaaccacattaaatctaattacttggtttaatagttaagttttcttttcat |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2935110 |
attcaaacatgagttctctagagtgattcatttgtcgacctaaacttattaaccacattaaatctaattacttagtttaatagttaagttttcttttcac |
2935209 |
T |
|
| Q |
101 |
tctcaattttataatatccaacctaactttctttacctccaaaaagaaaacctaatttaatcctttctattataaaaacatattcacataatcttgtcnn |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2935210 |
tctcaattttataatatccaacctaactttctttacctccaaaaagaaaacctgatttaatcctttctattataaaaacatattcacataatcttgtctt |
2935309 |
T |
|
| Q |
201 |
nnnnnnnngtttaacgaaagagggcataaacccnnnnnnnnnnnnnnnnnnnnnnctagtgactccacaataaaacaactaaatagactt-aaagagagg |
299 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
2935310 |
cttttttt-tttaacgaaagagggcataaaccccaaaataaaacaaaacaaaaaactagtgactccacaacaaaacaactaaatagacttaaaagagagg |
2935408 |
T |
|
| Q |
300 |
ctaggcaattttatttctctcatgtcaagtatgacaaacttggacttcctaataatccaaagacaaaagattacgaatatgt |
381 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||| |
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| T |
2935409 |
ctaggcaattctatttctctcatgtcaagtatgacaaacttaaacttcctaataattcaaagacaaaagattgcaaatatgt |
2935490 |
T |
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