View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_35 (Length: 390)
Name: NF19425_low_35
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 3248714 - 3248344
Alignment:
| Q |
18 |
ctctatagtaaaattatcacgcagttatatgcagtaatcaatctcgaccattaatttgtgatcagaccgtggagatctgcaacgttacagcaagaaatcc |
117 |
Q |
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| T |
3248714 |
ctctatagtaaaattatcacgcagttatatgcagtaatcaatctcgaccattaatttgtgatcaaaccgtggagatctgcaacgttacagcaagaaatcc |
3248615 |
T |
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| Q |
118 |
acannnnnnnggattaagctgtttctaactataactataaatatctgcagttcagctgtcagttaggtaaataaggggtttccaaattagagacaaacat |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3248614 |
acatttttttggattaagctgtttctaactataactataaatatctgcagttcagctgtcagttaggtaaataaggggtttccaaattagagacaaacat |
3248515 |
T |
|
| Q |
218 |
aacttgtgtcttcctcctccatcattaaatcagtactatgcaattaagaatcaagccaggctttcagagtgaccaaaactgagttgtctgtcctatatag |
317 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3248514 |
aacttgtgtcttcctcctccatcattaattcagtactatgcaattaagaatcaagccaggctttcagagtgaccaaaactgagttgtctgtcctatatag |
3248415 |
T |
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| Q |
318 |
tatctactatccctctaagtgttaaagtgaccctcataaattattaacttaaaatgttgcaatagaataat |
388 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3248414 |
tatctactatccctctaagtggtacagtgaccctcataaattattaacttaaaatgttgcaataaaataat |
3248344 |
T |
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