View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_37 (Length: 376)
Name: NF19425_low_37
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 25997170 - 25997532
Alignment:
| Q |
1 |
ttgttctttctgatttgaagcttttcaagcattgaagtctgttgcttataaacagattgaaaaatttggaaaaattcctcagtgaaaggatcaccagctg |
100 |
Q |
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| T |
25997170 |
ttgttctttctgatttgaagcttttcaagcattgaagtctgttgcttataaacagattgaaaaatttggaaaaattcctcagtgaaaggatcaccagctg |
25997269 |
T |
|
| Q |
101 |
ttttaaaattcttcaattcttgcaatgttcttgcatagcatttgtctcctgattcagattcttcctcgaaccgttgaatcgcaacaagaataagcaattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25997270 |
ttttaaaattcttcaattcttgcaatgttcttgcatagcatttgtctcctgattcagattcttcctcgaaccgttgaatcgcaacaagaataagcaattg |
25997369 |
T |
|
| Q |
201 |
gctatccctagctcttttcaagcacttctccaatgcagtgcagaaatccaatgtctgcaaactgttttcaaaatattcttcaaccagctcaaacagttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25997370 |
gctatccctagctcttttcaagcacttctccaatgcagtgcagaaatccaatgtttgcaaactgttttcaaaatattcttcaaccagctcaaacagatct |
25997469 |
T |
|
| Q |
301 |
tggctgttccatatgtctttcttgcaatccaagattactttcacaacttcttgattcatctca |
363 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25997470 |
tggctgttccatatgtctttcttgcaatccaagattactttcacaacttcttgattcatctca |
25997532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 46 - 362
Target Start/End: Original strand, 12558162 - 12558478
Alignment:
| Q |
46 |
ttataaacagattgaaaaatttggaaaaattcctcagtgaaaggatcaccagctgttttaaaattcttcaattcttgcaatgttcttgcatagcatttgt |
145 |
Q |
| |
|
||||||||||||||| | |||||||| ||||| ||||||||||||||||| | | |||||| |||||| || || || || | | ||||| |||| |
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| T |
12558162 |
ttataaacagattgatatatttggaagaattcttcagtgaaaggatcaccgacagccttaaaactcttcagctcctgtaacgtcttcacgtagcaattgt |
12558261 |
T |
|
| Q |
146 |
ctcctgattcagattcttcctcgaaccgttgaatcgcaacaagaataagcaattggctatccctagctcttttcaagcacttctccaatgcagtgcagaa |
245 |
Q |
| |
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|||| || ||| ||| || || ||| ||||| || ||| |||||||||||| |||||||| ||||| |||| |||||||| || ||| ||||||| |
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| T |
12558262 |
ctcccgacacagtttcctcatcaaacttttgaagagctacatcaataagcaattgactatccctggctctcttcagacacttctctaaagcattgcagaa |
12558361 |
T |
|
| Q |
246 |
atccaatgtctgcaaactgttttcaaaatattcttcaaccagctcaaacagttcttggctgttccatatgtctttcttgcaatccaagattactttcaca |
345 |
Q |
| |
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||| | |||| ||| || || ||||| || || ||||| ||||||||||||||||| || |||||||| |||||||| || || |||||||| |||||| |
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| T |
12558362 |
atctagagtcttcaagctattatcaaagtactcctcaacaagctcaaacagttcttgactcttccatatatctttcttacagtctaagattaccttcaca |
12558461 |
T |
|
| Q |
346 |
acttcttgattcatctc |
362 |
Q |
| |
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||||| ||||||||||| |
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|
| T |
12558462 |
acttcctgattcatctc |
12558478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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