View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_4 (Length: 726)
Name: NF19425_low_4
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 77 - 715
Target Start/End: Original strand, 22633329 - 22633972
Alignment:
| Q |
77 |
aaaccttgaactctcaatggatggtttcttccctagaaacaaatctgtcaaagttgactttgaaagcaaagaacactttagcagatcaagtacctatata |
176 |
Q |
| |
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||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| | |
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| T |
22633329 |
aaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgacttggaaagcaaagaacacttaagcagatcaagtacctataaa |
22633428 |
T |
|
| Q |
177 |
aaacaataa---------aaagaaaatt-aagagaggtgtttgaatagaatttataaacagtagtaatattcaaatacaaaaccttttctttagtggcat |
266 |
Q |
| |
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||| | ||| | |||||| ||||||| ||| | || ||||||||| | ||||||||||||||||||||||||||| ||| || |
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| T |
22633429 |
aaatagtaattgtaatcgatcaaaaattgaagagagaagtt-----ataacttataaacaaacgcaatattcaaatacaaaaccttttctttggtgaaat |
22633523 |
T |
|
| Q |
267 |
tcagaaccacttcttttaccgaactagggttttttatgccaaactccttgaacagactaaagcttgtataatcactacagtttggcttgatagtgagatc |
366 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
22633524 |
tcagaaccacttcttttaccgaactagggttttttatgccaaattcctcgaacagactaaagcttgtatagtcaatacagtttggcttgatagtgagatc |
22633623 |
T |
|
| Q |
367 |
atcagttatgacaaatgtagctacaccattaacaaatccttgggggagacgtgtaaggataattggatgggtaaaagaattcccacagtgacatttatgt |
466 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22633624 |
atcagttatgacaaaagtagctacatcattaacaaatccttgggggagacgtgtaaggataattggatgggtaaaagaattcccacagtgacatttatgt |
22633723 |
T |
|
| Q |
467 |
ttatctttataggttgagttggtaatattacgatataagcagccaatcaagtaggcggcacatgtgaagtactttgttggttgagtgtcgtcaatgttga |
566 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22633724 |
ttatctttatacgttgagttggtaatattacgatataagcagccaatagagtaggtggcacatgtgaagtactttgttggttgagtgtcgtcaatgttga |
22633823 |
T |
|
| Q |
567 |
ttttaagagtgttacaataatcttccgctgagttgattggttgtagaagcatttgtttgattgtatcgttagagaaacaaccttcatccagatctgccac |
666 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
22633824 |
ttttaagagtgttacaataatcttccgctgagttgattggttgtagaagcatttgtttgattgtctcgttagagacacaaccttcatccagatctgccac |
22633923 |
T |
|
| Q |
667 |
acttttatacagtgagtttagacaaccgactgtaacttgccctatgcta |
715 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
22633924 |
acttttatacagcgagtttagacaaccgactgtaacttgccctatgcta |
22633972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 232 - 475
Target Start/End: Complemental strand, 22625681 - 22625438
Alignment:
| Q |
232 |
aatattcaaatacaaaaccttttctttagtggcattcagaaccacttcttttaccgaactagggttttttatgccaaactccttgaacagactaaagctt |
331 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| |
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|
| T |
22625681 |
aatattcaaatacaaaaccttttctttggtgacattcagaaccacttcttttaccgaactagggttttttacgccaaattccttgaacaggctaaagctt |
22625582 |
T |
|
| Q |
332 |
gtataatcactacagtttggcttgatagtgagatcatcagttatgacaaatgtagctacaccattaacaaatccttgggggagacgtgtaaggataattg |
431 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| | || || |
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| T |
22625581 |
gtatagtcaatacagtttggcttgatagtgagatcatcagttatgacaaatgtagctacaccattaacaaatccttgggggagatgtttaagtaaaactg |
22625482 |
T |
|
| Q |
432 |
gatgggtaaaagaattcccacagtgacatttatgtttatcttta |
475 |
Q |
| |
|
|| |||||||| |||||||||| |||| ||| | ||||||||| |
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|
| T |
22625481 |
gacgggtaaaataattcccacaacgacacttaagattatcttta |
22625438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 218 - 630
Target Start/End: Complemental strand, 22623381 - 22622971
Alignment:
| Q |
218 |
ttataaacagtagtaatattcaaatacaaaaccttttctttagtggcattcagaaccacttcttttaccgaactagggtttttt-atgccaaactccttg |
316 |
Q |
| |
|
||||| ||| |||| || ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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|
| T |
22623381 |
ttatagacaatagtgatgttcaaatacaaaatcttttctttagtgacattcagaaccacttcttttaccgaactagggtttttttatgccaaactcgttg |
22623282 |
T |
|
| Q |
317 |
aacagactaaagcttgtataatcactacagtttggcttgatagtgagatcatcagttatgacaaatgtagctacaccattaacaaatccttgggggagac |
416 |
Q |
| |
|
|||| ||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||| ||| | |
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|
| T |
22623281 |
aacaaactaaagcttgtataggcaatacaatttggcttgatagtgagatcatcagttatgacaaaagtagttacaccagtaacaaatccttggcggatat |
22623182 |
T |
|
| Q |
417 |
gtgtaaggataattggatgggtaaaagaattcccacagtgacatttatgtttatctttataggttgagttggtaatattacgatataagcagccaatcaa |
516 |
Q |
| |
|
|| |||||| |||| || |||||||||| ||||| ||||||||| |||||||||||| || || |||| |||| ||||| |||||||| | || |
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| T |
22623181 |
gtttaaggaaaatttgaactgtaaaagaatgaccacatcgacatttatatttatctttatatgtcgatgtggtcatatcgcgatagtagcagccattaaa |
22623082 |
T |
|
| Q |
517 |
gtaggcggcacatgtgaagtactttgttggttgagtgtcgtcaatgttgattttaagagtgttacaataatcttccgctgagttgattggttgtagaagc |
616 |
Q |
| |
|
|| || ||| || | ||||||||||||||||||| || ||||| | |||||||||||| ||||||||||| || |||| || ||||| || | | |
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| T |
22623081 |
gt---tggtacacacgaggaactttgttggttgagtgtcatcgatgttaagtttaagagtgttgcaataatcttctgcgaagttaataggttgcagcaac |
22622985 |
T |
|
| Q |
617 |
atttgtttgattgt |
630 |
Q |
| |
|
||||||||| |||| |
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|
| T |
22622984 |
atttgtttggttgt |
22622971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 526 - 715
Target Start/End: Complemental strand, 22625351 - 22625162
Alignment:
| Q |
526 |
acatgtgaagtactttgttggttgagtgtcgtcaatgttgattttaagagtgttacaataatcttccgctgagttgattggttgtagaagcatttgtttg |
625 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||| |||||||| ||||| || || | |||||||||| |
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|
| T |
22625351 |
acatgcgaagtactttgttggttgagtgtcatcaatgttgagtttaagagtgttgcaataatcttcagctgagtttattggctgcagcaacatttgtttg |
22625252 |
T |
|
| Q |
626 |
attgtatcgttagagaaacaaccttcatccagatctgccacacttttatacagtgagtttagacaaccgactgtaacttgccctatgcta |
715 |
Q |
| |
|
|||| | | |||||||||||||||||||||| ||| |||||| ||| || |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22625251 |
gttgtcttagttgagaaacaaccttcatccagatttgcaacacttccatagagagagtttagacaaccaactgtaacttgccctatgcta |
22625162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 22625841 - 22625744
Alignment:
| Q |
77 |
aaaccttgaactctcaatggatggtttcttccctagaaacaaatctgtcaaagttgactttgaaagcaaagaacactttagcagatcaagtacctata |
174 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
22625841 |
aaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgacttggaaagcaaagaacacttaagcagatcaagtacctata |
22625744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 549 - 715
Target Start/End: Complemental strand, 23365876 - 23365710
Alignment:
| Q |
549 |
gagtgtcgtcaatgttgattttaagagtgttacaataatcttccgctgagttgattggttgtagaagcatttgtttgattgtatcgttagagaaacaacc |
648 |
Q |
| |
|
||||||| || ||||| | || ||||||||| ||||||||||| || |||| |||||| || ||||||||||||||||||| || | |||| | |
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|
| T |
23365876 |
gagtgtcttcgatgttaagttcaagagtgttgcaataatcttctgcaaagttagttggtttaagcagcatttgtttgattgtatgactactcatacaatc |
23365777 |
T |
|
| Q |
649 |
ttcatccagatctgccacacttttatacagtgagtttagacaaccgactgtaacttgccctatgcta |
715 |
Q |
| |
|
|||||| ||||| |||||||| ||| ||||||||||||||||| || |||||| ||||||||||| |
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|
| T |
23365776 |
ttcatcaagatcaaccacacttcgatagagtgagtttagacaaccaacggtaactggccctatgcta |
23365710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 175
Target Start/End: Complemental strand, 23366421 - 23366320
Alignment:
| Q |
74 |
gaaaaaccttgaactctcaatggatggtttcttccctagaaacaaatctgtcaaagttgactttgaaagcaaagaacactttagcagatcaagtacctat |
173 |
Q |
| |
|
||||||||| ||| ||||| |||||||||||| |||| ||| ||||| |||||||| ||||| || | ||||||||| |||| || ||||||||||||| |
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|
| T |
23366421 |
gaaaaacctggaaacctcaagggatggtttctttcctaaaaagaaatcggtcaaagtagacttcgacaacaaagaacattttaacaaatcaagtacctat |
23366322 |
T |
|
| Q |
174 |
at |
175 |
Q |
| |
|
|| |
|
|
| T |
23366321 |
at |
23366320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 23262735 - 23262820
Alignment:
| Q |
91 |
caatggatggtttcttccctagaaacaaatctgtcaaagttgactttgaaagcaaagaacactttagcagatcaagtacctatata |
176 |
Q |
| |
|
|||||| ||||||| | | || ||||| ||| |||||||||||||| |||| |||||| || ||||| ||||| |||||||||||| |
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|
| T |
23262735 |
caatggttggtttcattcttaaaaacacatcggtcaaagttgacttagaaatcaaagagcattttagaagatccagtacctatata |
23262820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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