View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19425_low_40 (Length: 367)

Name: NF19425_low_40
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19425_low_40
NF19425_low_40
[»] chr6 (2 HSPs)
chr6 (115-355)||(32343166-32343406)
chr6 (283-325)||(32343379-32343421)
[»] chr4 (1 HSPs)
chr4 (20-149)||(3742739-3742872)
[»] chr7 (4 HSPs)
chr7 (53-147)||(48693188-48693282)
chr7 (88-148)||(16698437-16698497)
chr7 (88-148)||(17672673-17672733)
chr7 (19-53)||(30279169-30279203)
[»] chr8 (2 HSPs)
chr8 (23-150)||(38276321-38276452)
chr8 (19-53)||(32049086-32049120)
[»] chr1 (1 HSPs)
chr1 (115-151)||(31847317-31847353)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 115 - 355
Target Start/End: Original strand, 32343166 - 32343406
Alignment:
Q  115 gaatgagcaattttgaaagtgagaacagcaattttcaactacaaattatattaattcaaggcttatttgcttcaacaacattcttgtgaccaccaatgaa 214  Q
    |||||||||||||| |||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32343166 gaatgagcaattttaaaagtgagaagagcaattttcaactacaaactatattaatttaaggcttatttgcttcaacaacattcttgtgaccaccaatgaa 32343265  T
Q  215 accgccaactccaccaataacaccccctccaatccctcctacacctcctccaattcctttgtaagcaaaacctccaattccacctccaattcccttagat 314  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32343266 accaccaactccaccaataacaccccctccaatccctcctacacctcctccaattcctttgtaagcaaaacctccaattccacctccaattcccttagat 32343365  T
Q  315 gttccacctccataacctccaattccacctacaattccctt 355  Q
     |||||||||||||||||||||||||||| |||||||||||    
T  32343366 attccacctccataacctccaattccaccaacaattccctt 32343406  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 325
Target Start/End: Original strand, 32343379 - 32343421
Alignment:
Q  283 aacctccaattccacctccaattcccttagatgttccacctcc 325  Q
    ||||||||||||||||  |||||||||||||| ||||||||||    
T  32343379 aacctccaattccaccaacaattcccttagatattccacctcc 32343421  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 3742872 - 3742739
Alignment:
Q  20 tgtctacgtgagttaacacacgctgaaaaatgtc----gtgaattaactcacattgaaaaaaccaaacgcgtgttaactcatgctgaacataattacgag 115  Q
    |||||| |||||||||| |||| | ||||||||     ||||||||||| || |||||||| || |||| | ||||||||||| |||||||||||| | |    
T  3742872 tgtctatgtgagttaactcacgttaaaaaatgttcattgtgaattaacttacgttgaaaaagccgaacgtgagttaactcatgttgaacataattaaggg 3742773  T
Q  116 aatgagcaattttgaaagtgagaacagcaatttt 149  Q
    | |||||||||||||||| ||||| | |||||||    
T  3742772 attgagcaattttgaaagggagaagaacaatttt 3742739  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 48693188 - 48693282
Alignment:
Q  53 cgtgaattaactcacattgaaaaaaccaaacgcgtgttaactcatgctgaacataattacgagaatgagcaattttgaaagtgagaacagcaatt 147  Q
    ||||| ||||||||| ||||||||||||| || | ||||||||| |||| ||||||||| | ||||||| |||||| |||| ||||| |||||||    
T  48693188 cgtgagttaactcacgttgaaaaaaccaagcgtgagttaactcacgctggacataattaagggaatgagtaattttaaaagggagaagagcaatt 48693282  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 16698437 - 16698497
Alignment:
Q  88 gttaactcatgctgaacataattacgagaatgagcaattttgaaagtgagaacagcaattt 148  Q
    |||||||||||||||||||  ||| | |||||||||||||| |||| ||||| ||||||||    
T  16698437 gttaactcatgctgaacatttttaagggaatgagcaattttaaaagggagaagagcaattt 16698497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 17672673 - 17672733
Alignment:
Q  88 gttaactcatgctgaacataattacgagaatgagcaattttgaaagtgagaacagcaattt 148  Q
    |||||||||||||||||||  ||| | |||||||||||||| |||| ||||| ||||||||    
T  17672673 gttaactcatgctgaacatttttaagggaatgagcaattttaaaagggagaagagcaattt 17672733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 30279203 - 30279169
Alignment:
Q  19 gtgtctacgtgagttaacacacgctgaaaaatgtc 53  Q
    |||||||||||||||||| ||||||||||||||||    
T  30279203 gtgtctacgtgagttaactcacgctgaaaaatgtc 30279169  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 150
Target Start/End: Complemental strand, 38276452 - 38276321
Alignment:
Q  23 ctacgtgagttaacacacgctgaaaaatgt----cgtgaattaactcacattgaaaaaaccaaacgcgtgttaactcatgctgaacataattacgagaat 118  Q
    |||| ||||| ||| || ||||||||||||    ||||| ||||||||| ||||||| ||| | || | |||||||||||  | ||||||||| | ||||    
T  38276452 ctacttgagtgaactcatgctgaaaaatgttcggcgtgagttaactcacgttgaaaagaccgagcgtgagttaactcatgtaggacataattaagggaat 38276353  T
Q  119 gagcaattttgaaagtgagaacagcaattttc 150  Q
    |||||||||| |||| ||| | ||||||||||    
T  38276352 gagcaattttaaaagggaggagagcaattttc 38276321  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 32049086 - 32049120
Alignment:
Q  19 gtgtctacgtgagttaacacacgctgaaaaatgtc 53  Q
    |||||||||||||||||| ||||||||||||||||    
T  32049086 gtgtctacgtgagttaactcacgctgaaaaatgtc 32049120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 31847353 - 31847317
Alignment:
Q  115 gaatgagcaattttgaaagtgagaacagcaattttca 151  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  31847353 gaatgagcaattttgaaagggagaagagcaattttca 31847317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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