View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_46 (Length: 339)
Name: NF19425_low_46
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 49016452 - 49016157
Alignment:
| Q |
18 |
aaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttatggattgctcccacaaatcctaagtttctatttttccc |
117 |
Q |
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| T |
49016452 |
aaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttacggattgctcccacaaatcctaagtttctatttttccc |
49016353 |
T |
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| Q |
118 |
ccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggatctttactacggtaa |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49016352 |
ccaatgtggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggatctttactacggtaa |
49016253 |
T |
|
| Q |
218 |
tatgtgatgtcgaaattcacagcatcctctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataaggattccattgtatagatctaagcc |
315 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49016252 |
tatgtgatgtcgaaatccacagcat--tctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataaggattccattgtatagatctaagcc |
49016157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 43 - 318
Target Start/End: Original strand, 490327 - 490602
Alignment:
| Q |
43 |
tttaaccttcaaaaacttacctgctttcttatacttatggattgctcccacaaatcctaagtttctatttttcccccaatgcggtaaccctccatatttg |
142 |
Q |
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| T |
490327 |
tttaaccttcaaaaacctatttgccttattatatttttttattgcccccacaaatcctatatttctattttttccccaatggggtaaccctccatatttg |
490426 |
T |
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| Q |
143 |
aacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggatctttactacggtaatatgtgatgtcgaaattcacagcat |
242 |
Q |
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| T |
490427 |
aacaatcctatttgttctatctcttcaattatatcttcataaagcctaggagtcaatggatctttactgcggtaatatatgatgtcaaattccacagcat |
490526 |
T |
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| Q |
243 |
cctctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataaggattccattgtatagatctaagccaca |
318 |
Q |
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| T |
490527 |
cttctgtttttcccaagtatgcactagaagttgtaacataacgcatgaggattccattgtacaagtctaagccaca |
490602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 104 - 304
Target Start/End: Complemental strand, 9072069 - 9071869
Alignment:
| Q |
104 |
tttctatttttcccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggat |
203 |
Q |
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|||||||| || |||||||| |||||||||||||| ||||| | ||||||||||| |||||||||| ||||||||| |||||||||||| || ||||| |
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| T |
9072069 |
tttctattcttaccccaatgaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggat |
9071970 |
T |
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| Q |
204 |
ctttactacggtaatatgtgatgtcgaaattcacagcatcctctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataaggattccattgta |
303 |
Q |
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|||| ||||| ||||||||||| || || | | ||||||||| |||||| | ||| |||||||||| |||||| || ||||| || ||||||||||| |
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| T |
9071969 |
ctttgctacgataatatgtgatatcaaagtctaatgcatcctcttggtttcctaggtaagcactagaagctgtaacataacgcattagaattccattgta |
9071870 |
T |
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| Q |
304 |
t |
304 |
Q |
| |
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| |
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| T |
9071869 |
t |
9071869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 9059350 - 9059233
Alignment:
| Q |
107 |
ctatttttcccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggatctt |
206 |
Q |
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||||| ||||||||||| || |||||||||||||| || | ||| ||||| || |||||||||| | ||||||| ||||||||||||||| |||||||| |
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| T |
9059350 |
ctattcttcccccaatgaggcaaccctccatatttaaaaatccctatttgctcaatctcttcaaaaacgtcttcataaagcctaggagtcattggatctt |
9059251 |
T |
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| Q |
207 |
tactacggtaatatgtga |
224 |
Q |
| |
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| ||||||||||| |||| |
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| T |
9059250 |
tgctacggtaatacgtga |
9059233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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