View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19425_low_47 (Length: 336)

Name: NF19425_low_47
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19425_low_47
NF19425_low_47
[»] chr1 (9 HSPs)
chr1 (1-330)||(48265405-48265734)
chr1 (6-184)||(21528290-21528472)
chr1 (1-176)||(36305908-36306083)
chr1 (9-129)||(36929299-36929419)
chr1 (102-178)||(37530791-37530867)
chr1 (61-178)||(32353136-32353253)
chr1 (102-178)||(48073270-48073346)
chr1 (61-178)||(30970447-30970564)
chr1 (102-150)||(25504860-25504908)
[»] chr3 (11 HSPs)
chr3 (1-201)||(49731747-49731948)
chr3 (10-176)||(30167185-30167352)
chr3 (61-178)||(2813339-2813456)
chr3 (102-178)||(6176317-6176393)
chr3 (102-178)||(23601998-23602074)
chr3 (102-178)||(29309633-29309709)
chr3 (102-171)||(25872954-25873023)
chr3 (77-178)||(9379297-9379398)
chr3 (102-177)||(14867625-14867700)
chr3 (102-176)||(54439954-54440028)
chr3 (121-170)||(30435297-30435346)
[»] chr5 (3 HSPs)
chr5 (1-201)||(10486735-10486936)
chr5 (102-178)||(34481172-34481248)
chr5 (64-176)||(587703-587815)
[»] chr4 (12 HSPs)
chr4 (7-184)||(8654906-8655083)
chr4 (1-182)||(47541049-47541230)
chr4 (9-201)||(3129797-3129987)
chr4 (6-176)||(7663080-7663250)
chr4 (61-178)||(2631582-2631699)
chr4 (102-178)||(23873315-23873391)
chr4 (102-178)||(55298845-55298921)
chr4 (61-178)||(8486820-8486937)
chr4 (61-178)||(20675206-20675323)
chr4 (102-150)||(49926133-49926181)
chr4 (102-150)||(19647934-19647982)
chr4 (102-150)||(29553607-29553655)
[»] chr8 (5 HSPs)
chr8 (1-155)||(19384572-19384726)
chr8 (1-176)||(7452476-7452651)
chr8 (61-178)||(16420849-16420966)
chr8 (102-150)||(4987932-4987980)
chr8 (59-177)||(11394188-11394306)
[»] chr7 (9 HSPs)
chr7 (1-176)||(15653546-15653721)
chr7 (6-128)||(46623834-46623956)
chr7 (102-178)||(45943076-45943152)
chr7 (63-178)||(43105497-43105612)
chr7 (12-161)||(12378584-12378730)
chr7 (102-178)||(13440278-13440354)
chr7 (81-150)||(45992780-45992849)
chr7 (102-177)||(19728712-19728787)
chr7 (121-150)||(25924314-25924343)
[»] chr6 (9 HSPs)
chr6 (1-158)||(33630221-33630378)
chr6 (6-147)||(1683169-1683310)
chr6 (61-178)||(15674009-15674126)
chr6 (61-178)||(23347306-23347423)
chr6 (102-178)||(25318079-25318155)
chr6 (102-178)||(26205573-26205649)
chr6 (78-150)||(19255841-19255913)
chr6 (78-150)||(33640119-33640191)
chr6 (102-150)||(503399-503447)
[»] scaffold0418 (1 HSPs)
scaffold0418 (6-176)||(7804-7974)
[»] chr2 (11 HSPs)
chr2 (6-176)||(45421648-45421818)
chr2 (61-178)||(43627683-43627800)
chr2 (102-178)||(33548097-33548173)
chr2 (6-178)||(31085476-31085648)
chr2 (107-178)||(26894451-26894522)
chr2 (107-178)||(26899890-26899961)
chr2 (102-161)||(22052852-22052911)
chr2 (102-178)||(13550349-13550425)
chr2 (103-161)||(36804138-36804196)
chr2 (121-150)||(12525185-12525214)
chr2 (121-161)||(21517684-21517724)
[»] scaffold0029 (1 HSPs)
scaffold0029 (97-184)||(134687-134774)
[»] scaffold0002 (2 HSPs)
scaffold0002 (97-184)||(312514-312601)
scaffold0002 (97-184)||(327968-328055)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 48265734 - 48265405
Alignment:
Q  1 tggtactgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaaaaacaaga 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||    
T  48265734 tggtcctgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatatatctgaaacattcggaaacaaga 48265635  T
Q  101 gaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccacataa-ccctcgctgctccggatc 199  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| ||||| ||||    
T  48265634 gaacatcaagaagtaaagccctacactccgctaacaactcctcctcccactgccacaacctacgtctccacctccacataaccccccgccgctccagatc 48265535  T
Q  200 aaaaaacatgttaaaaaactaaactcacatggtttctagcttgtcacacatgttgtaacaatttaatcttttttaaaggcgtcacaacaaatcgttattc 299  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48265534 aaaaaacatgtt-aaaaactaaactcacatggtttctagcttgtcacacatgttgtaacaatttaatcttttttaaaggcgtcacaacaaatcgttcttc 48265436  T
Q  300 tttaaatgcatcgcaacaaaatattcttcga 330  Q
    |||||||||||||||||||||| ||||||||    
T  48265435 tttaaatgcatcgcaacaaaattttcttcga 48265405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 6 - 184
Target Start/End: Original strand, 21528290 - 21528472
Alignment:
Q  6 ctgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaaaaacaagagaaca 105  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||  |||||||||||||    
T  21528290 ctgagaggttagcacatgataagcaccactaacggtgtatccatctgacggagcaggaagccaaacccgtctatctgaaacattcggaaacaagagaaca 21528389  T
Q  106 tcaagaagtaaagctctac-actcca---ctaacaactcctcctcccactgccacaacctacgtctccaactccacataaccc 184  Q
    |||||||||||||| ||||  |||||   ||||||  ||||||||||||| ||| |||||||||||||| |||||||||||||    
T  21528390 tcaagaagtaaagccctacgtctccaccgctaacatgtcctcctcccactaccataacctacgtctccacctccacataaccc 21528472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 36305908 - 36306083
Alignment:
Q  1 tggtactgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaaaaacaaga 100  Q
    |||| ||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| ||||| ||| ||||||||||||||  |||||| |    
T  36305908 tggtcctgagaggttagcacatgataagcaccacgaatagtgtatccatctgaaggagcaggaagacaaacccatatatctgaaacattcggaaacaata 36306007  T
Q  101 gaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactcca 176  Q
    ||| ||||||||||||||| ||||||||| |||||| |||||||| |||||||||||| ||||| ||||| |||||    
T  36306008 gaatatcaagaagtaaagccctacactcctctaacatctcctccttccactgccacaatctacgcctccacctcca 36306083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 36929299 - 36929419
Alignment:
Q  9 agaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaaaaacaagagaacatca 108  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||| |||||||||||||   ||||||||||||||||    
T  36929299 agaggttagcacatgataagcaccacgaacagtgtatccatctgaaggagcaggaagtcaaacccatatatctgaaacatttggaaacaagagaacatca 36929398  T
Q  109 agaagtaaagctctacactcc 129  Q
    ||||||||||| |||||||||    
T  36929399 agaagtaaagccctacactcc 36929419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 37530791 - 37530867
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccaca 178  Q
    |||||||||||||||||| ||||||||| ||| |||| |||||||||||||||| |||||||||||||| |||||||    
T  37530791 aacatcaagaagtaaagccctacactcctctagcaacccctcctcccactgccataacctacgtctccacctccaca 37530867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 32353253 - 32353136
Alignment:
Q  61 ggaagccaaactcatctatctgaaacattcaaaaacaagagaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacc 160  Q
    |||||||| || || ||||||||||||||   |  ||||  |||||||||||||||||| ||||||||  ||| ||||||||||| ||||||||| ||||    
T  32353253 ggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctccttccactgccataacc 32353154  T
Q  161 tacgtctccaactccaca 178  Q
    |||||||||| |||||||    
T  32353153 tacgtctccacctccaca 32353136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 48073346 - 48073270
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccaca 178  Q
    |||||||||||||||||| | ||||||  ||| ||||||||||||||||| ||| |||||||||||||| |||||||    
T  48073346 aacatcaagaagtaaagccccacactcatctagcaactcctcctcccactcccataacctacgtctccacctccaca 48073270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 30970564 - 30970447
Alignment:
Q  61 ggaagccaaactcatctatctgaaacattcaaaaacaagagaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacc 160  Q
    |||||||| || ||| |||||||||||||   | ||||   ||||||||||||||| || ||||||||| | | || |||||||||||||  |||||| |    
T  30970564 ggaagccacacccatttatctgaaacattaggagacaaagaaacatcaagaagtaaggccctacactccgccaccatctcctcctcccacgcccacaatc 30970465  T
Q  161 tacgtctccaactccaca 178  Q
    |||| ||||| |||||||    
T  30970464 tacgcctccacctccaca 30970447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 25504908 - 25504860
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccac 150  Q
    ||||||||| || ||||| |||||||||||||||| |||||||||||||    
T  25504908 aacatcaagcagaaaagccctacactccactaacatctcctcctcccac 25504860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 49731948 - 49731747
Alignment:
Q  1 tggtactgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaaaaacaaga 100  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  49731948 tggtcctgagaggttagcacatgataagaaccactaacagtgtatccatctgacggagcaggaagccaaacccatctatctgaaacattcagaaacaaga 49731849  T
Q  101 gaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccacataa-ccctcgctgctccggatc 199  Q
    ||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| ||||||||||| |||||||||| ||| ||||||||||||||    
T  49731848 gaacatcaagaagtaaagccctacactccgccaacaactcctcctcccactgccacaaactacgtctccacctccacataaccccccgctgctccggatc 49731749  T
Q  200 aa 201  Q
    ||    
T  49731748 aa 49731747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 30167352 - 30167185
Alignment:
Q  10 gaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaa-aaacaagagaacatca 108  Q
    ||||||||||| ||||||||||||| |||| ||||||||||| | ||||||||||||||||| ||  ||||||||||||||   |||||| |||||||||    
T  30167352 gaggttagcacctgataagcaccacgaacaatgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggcaaacaaaagaacatca 30167253  T
Q  109 agaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactcca 176  Q
    ||||||||||  ||||||||| |||||| ||||||||||||||||||||| ||||| ||||| |||||    
T  30167252 agaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctcca 30167185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 2813456 - 2813339
Alignment:
Q  61 ggaagccaaactcatctatctgaaacattcaaaaacaagagaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacc 160  Q
    |||||||| || || ||||||||||||||   |  ||||  |||||||||||||||||| ||||||||  ||| ||||||||||||||||||||| ||||    
T  2813456 ggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacc 2813357  T
Q  161 tacgtctccaactccaca 178  Q
    |||||||||| |||||||    
T  2813356 tacgtctccacctccaca 2813339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 6176393 - 6176317
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccaca 178  Q
    |||||||||||||||||| ||||||||  ||| ||||||||||||||||||| | |||||||||||||| |||||||    
T  6176393 aacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgctataacctacgtctccacctccaca 6176317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 23601998 - 23602074
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccaca 178  Q
    |||||||||||||||||| ||||||||  ||| ||||||||||||||||||||| |||||| ||||||| |||||||    
T  23601998 aacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctatgtctccacctccaca 23602074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 29309633 - 29309709
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccaca 178  Q
    ||||||||||||||| || ||||||||  ||| ||||||||||||||||||||| |||||||||||||| |||||||    
T  29309633 aacatcaagaagtaacgccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccaca 29309709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 25873023 - 25872954
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaa 171  Q
    |||||||| ||||||||| ||||||||| ||| |||| |||||||||||||||| |||||||||||||||    
T  25873023 aacatcaaaaagtaaagccctacactcctctagcaacccctcctcccactgccataacctacgtctccaa 25872954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 9379297 - 9379398
Alignment:
Q  77 tatctgaaacattcaaaaacaagagaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactcca 176  Q
    |||||||||||||   | |||||  ||||||||| ||||| || ||||||||| |||||| | |||||||||||||||| ||||| || ||||| |||||    
T  9379297 tatctgaaacattgggatacaaggaaacatcaagtagtaatgccctacactccgctaacatcccctcctcccactgccataacctgcgcctccacctcca 9379396  T
Q  177 ca 178  Q
    ||    
T  9379397 ca 9379398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 14867700 - 14867625
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccac 177  Q
    ||||||||| | ||| || ||||||||| |||| ||  |||||||||||  ||||||||| |||||||||||||||    
T  14867700 aacatcaagtattaaggccctacactcctctaataaaacctcctcccacgcccacaacctccgtctccaactccac 14867625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 54440028 - 54439954
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactcca 176  Q
    ||||||||| |||||||| ||||||||| |||| ||||| || ||||||  |||||  ||||| |||||||||||    
T  54440028 aacatcaagcagtaaagccctacactcctctaataactcttcttcccacgcccacagtctacgcctccaactcca 54439954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 30435297 - 30435346
Alignment:
Q  121 ctacactccactaacaactcctcctcccactgccacaacctacgtctcca 170  Q
    ||||||||| |||||| |||||||||||||| ||||||||| || |||||    
T  30435297 ctacactcccctaacagctcctcctcccactcccacaacctccgcctcca 30435346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 10486936 - 10486735
Alignment:
Q  1 tggtactgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaaaaacaaga 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||    
T  10486936 tggtcctgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaacccatctatctgaaacattcggaaacaaga 10486837  T
Q  101 gaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccacataa-ccctcgctgctccggatc 199  Q
    ||||||||||||||||||| ||||||||| ||||||  |||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||| |||    
T  10486836 gaacatcaagaagtaaagccctacactccgctaacatgtcctcctcccactgccacaacctacgtctccacctccacataaccccccgctgctccgaatc 10486737  T
Q  200 aa 201  Q
    ||    
T  10486736 aa 10486735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 34481172 - 34481248
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccaca 178  Q
    |||||||||||||||||| ||||||||| ||| |||| |||||||||||||||| |||||||||||||| |||||||    
T  34481172 aacatcaagaagtaaagccctacactcctctagcaacccctcctcccactgccataacctacgtctccacctccaca 34481248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 587703 - 587815
Alignment:
Q  64 agccaaactcatctatctgaaacattcaaaaacaagagaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctac 163  Q
    ||||| ||||||||||||||||||||   | ||||   |||||||||||||||||| ||||||||| ||||||  ||||||||||||  ||| | |||||    
T  587703 agccacactcatctatctgaaacattaggatacaaagaaacatcaagaagtaaagccctacactcctctaacatatcctcctcccacatccatagcctac 587802  T
Q  164 gtctccaactcca 176  Q
    | ||||| |||||    
T  587803 gcctccacctcca 587815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 8655083 - 8654906
Alignment:
Q  7 tgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaaaaacaagagaacat 106  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||    
T  8655083 tgagaggttagcacatgataagcaccactaacagtgtatccctctgacggagcaggaagccaaacccatctatctgaaacattcggaaacaagagaacat 8654984  T
Q  107 caagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccacataaccc 184  Q
    ||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| |||||    
T  8654983 caagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccc 8654906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 47541049 - 47541230
Alignment:
Q  1 tggtactgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaaaaacaaga 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||  |||||| |    
T  47541049 tggtcctgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaaaccaaacctatctatctgaaacattcggaaacaaaa 47541148  T
Q  101 gaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccacataac 182  Q
    ||||||||||||||||||| ||||||||| |||||| |||||||| |||||||||||| | ||||||||| |||||||||||    
T  47541149 gaacatcaagaagtaaagccctacactccgctaacatctcctccttccactgccacaaacgacgtctccacctccacataac 47541230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 3129987 - 3129797
Alignment:
Q  9 agaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaaaaacaagagaacatca 108  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||  || |||||||||||||    
T  3129987 agaggttagcacatgataagcaccactaacaatgtatccatctgacggagcaggaagccaaacccatctatctgaaacattcggaagcaagagaacatca 3129888  T
Q  109 agaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccacataa-ccctcgctgctccggatcaa 201  Q
    ||||||||||| ||||||||| ||||||    |||||||||||||||||| | ||||||||| |||||| ||| |||| ||||||||| |||||    
T  3129887 agaagtaaagccctacactccgctaaca---tctcctcccactgccacaaacaacgtctccacctccacgtaacccctagctgctccgaatcaa 3129797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 7663250 - 7663080
Alignment:
Q  6 ctgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaaaaacaagagaaca 105  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||  |||||| ||||||    
T  7663250 ctgagaggttagcacctgataagcaccacgaacagtgtatccatctaaaggagcaggaagccaaacccatgtatctgaaacattcggaaacaaaagaaca 7663151  T
Q  106 tcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactcca 176  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||    
T  7663150 tcaagaagtaaagccatacactccactaacatctcctcctcccactgccacaatctacgcctccacctcca 7663080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 178
Target Start/End: Original strand, 2631582 - 2631699
Alignment:
Q  61 ggaagccaaactcatctatctgaaacattcaaaaacaagagaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacc 160  Q
    |||||||| || || ||||||||||||||   |  ||||  |||||||||||||||||| ||||||||  ||| ||||||||||||||||||||| ||||    
T  2631582 ggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacc 2631681  T
Q  161 tacgtctccaactccaca 178  Q
    |||||||||| |||||||    
T  2631682 tacgtctccacctccaca 2631699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 23873391 - 23873315
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccaca 178  Q
    |||||||||||||||||| ||||||||  ||| |||||||||||||||||||||  ||||||||||||| |||||||    
T  23873391 aacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccattacctacgtctccacctccaca 23873315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 55298845 - 55298921
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccaca 178  Q
    |||||||||||||||||| ||||||||  ||| ||||||||||||||||||||| || ||||||||||| |||||||    
T  55298845 aacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataaactacgtctccacctccaca 55298921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 8486937 - 8486820
Alignment:
Q  61 ggaagccaaactcatctatctgaaacattcaaaaacaagagaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacc 160  Q
    |||||||| || || ||||||||||||||   |  ||||  |||||||||||||||||| |||||||   ||| |||||||| |||||||||||| ||||    
T  8486937 ggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactaatctagcaactccttctcccactgccataacc 8486838  T
Q  161 tacgtctccaactccaca 178  Q
    |||||||||| |||||||    
T  8486837 tacgtctccacctccaca 8486820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 178
Target Start/End: Original strand, 20675206 - 20675323
Alignment:
Q  61 ggaagccaaactcatctatctgaaacattcaaaaacaagagaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacc 160  Q
    |||||||| || || ||||||||||||||   |  ||||  |||||||||||||||||  ||||||||  | | ||||||||||||||||||||| ||||    
T  20675206 ggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagtcctacactcatcaagcaactcctcctcccactgccataacc 20675305  T
Q  161 tacgtctccaactccaca 178  Q
    |||||||||| |||||||    
T  20675306 tacgtctccacctccaca 20675323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 49926181 - 49926133
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccac 150  Q
    ||||||||| || ||||| ||||||||||||||||||||||||||||||    
T  49926181 aacatcaagcagaaaagccctacactccactaacaactcctcctcccac 49926133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 19647934 - 19647982
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccac 150  Q
    ||||||||| || ||||| |||||||||||||||| |||||||||||||    
T  19647934 aacatcaagcagaaaagccctacactccactaacatctcctcctcccac 19647982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 29553655 - 29553607
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccac 150  Q
    ||||||||  |||||||  ||||||||| ||||||||||||||||||||    
T  29553655 aacatcaaacagtaaagtcctacactcctctaacaactcctcctcccac 29553607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 19384726 - 19384572
Alignment:
Q  1 tggtactgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaaaaacaaga 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||  ||||||||    
T  19384726 tggtcctgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaacccatctatctgaaacactcggaaacaaga 19384627  T
Q  101 gaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgcca 155  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  19384626 gaacatcaagaagtaaagccctacactccactaacatctcctcctcccactgcca 19384572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 7452476 - 7452651
Alignment:
Q  1 tggtactgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaaaaacaaga 100  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||    
T  7452476 tggtcctgagaggttagcacatgataagcaccacgaacagtgtatccatctgaaggagcaggaagccaaacccatctatctgaaacattcggaaacaaga 7452575  T
Q  101 gaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactcca 176  Q
    ||||||||||||||||||| ||||||||| |||| ||| ||||||||||||||||||| ||||| ||||| |||||    
T  7452576 gaacatcaagaagtaaagccctacactcctctaataacacctcctcccactgccacaatctacgcctccacctcca 7452651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 16420966 - 16420849
Alignment:
Q  61 ggaagccaaactcatctatctgaaacattcaaaaacaagagaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacc 160  Q
    |||||||| || || ||||||||||||||   |  ||||  |||||| ||||||||||| |||| |||  ||| ||||||||||||||||||||| ||||    
T  16420966 ggaagccacacccagctatctgaaacattaggattcaaggaaacatcgagaagtaaagccctacgctcatctagcaactcctcctcccactgccataacc 16420867  T
Q  161 tacgtctccaactccaca 178  Q
    |||||||||| |||||||    
T  16420866 tacgtctccacctccaca 16420849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 4987980 - 4987932
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccac 150  Q
    ||||||||| || ||||| |||||||||||||||| |||||||||||||    
T  4987980 aacatcaagcagaaaagccctacactccactaacatctcctcctcccac 4987932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 177
Target Start/End: Complemental strand, 11394306 - 11394188
Alignment:
Q  59 caggaagccaaactcatctatctgaaacattcaaaaacaagagaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaa 158  Q
    ||||||||||||| ||   |||||||| |||   |||||| | ||| ||||| ||||| || ||||||||| |||| ||  |||||||||||  ||||||    
T  11394306 caggaagccaaacccaagaatctgaaatattaggaaacaaaaaaacttcaagcagtaaggccctacactcctctaataaaacctcctcccacgcccacaa 11394207  T
Q  159 cctacgtctccaactccac 177  Q
    ||| || ||||||||||||    
T  11394206 cctccgcctccaactccac 11394188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 6e-59; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 15653721 - 15653546
Alignment:
Q  1 tggtactgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaaaaacaaga 100  Q
    |||| ||||||||||||||||||||| ||||||| ||||||||||||||||   ||||||||||||||||| ||||||||||||||||||  ||||||||    
T  15653721 tggtcctgagaggttagcacatgataggcaccacgaacagtgtatccatctagaggagcaggaagccaaacccatctatctgaaacattcggaaacaaga 15653622  T
Q  101 gaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactcca 176  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||| ||||| ||||| |||||    
T  15653621 gaacatcaagaagtaaagccctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctcca 15653546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 46623834 - 46623956
Alignment:
Q  6 ctgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaaaaacaagagaaca 105  Q
    ||||||||||||||| | ||||||||||| |||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||  | |||||| ||||    
T  46623834 ctgagaggttagcaccttataagcaccacaaacagtgtatccatctaaaggagcaggaagccaaacccatgtatctgaaacattcggagacaagataaca 46623933  T
Q  106 tcaagaagtaaagctctacactc 128  Q
    |||||||||||||| ||||||||    
T  46623934 tcaagaagtaaagccctacactc 46623956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 45943076 - 45943152
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccaca 178  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| || |||| |||||| |||||||    
T  45943076 aacatcaagaagtaaagccctacactcctctagcaactcctcctcccactgccataatctacatctccacctccaca 45943152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 178
Target Start/End: Original strand, 43105497 - 43105612
Alignment:
Q  63 aagccaaactcatctatctgaaacattcaaaaacaagagaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaaccta 162  Q
    ||||||||| ||||||||||||||||||  |||||||  ||||| ||  ||||| || ||||||||  |||||| |||||||||||| |||||||||||     
T  43105497 aagccaaacccatctatctgaaacattcggaaacaaggaaacattaaagagtaacgccctacactctgctaacatctcctcctcccattgccacaacctg 43105596  T
Q  163 cgtctccaactccaca 178  Q
    || ||||| |||||||    
T  43105597 cgcctccacctccaca 43105612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 12378730 - 12378584
Alignment:
Q  12 ggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaaaaacaagagaacatcaaga 111  Q
    |||||||| || ||||||||||| ||| ||||| |||  ||||||| | || |||||||| || |||||| |||||||   | ||| |  ||||||||||    
T  12378730 ggttagcaaatcataagcaccacgaactgtgtagccacatgacggatccgggagccaaacccagctatctaaaacattaggatacagggaaacatcaaga 12378631  T
Q  112 agtaaagctctacactccactaacaactcctcctcccactgccacaacct 161  Q
    |||   || ||||||||| |||||| ||||||||||||||||||||||||    
T  12378630 agt---gccctacactccgctaacatctcctcctcccactgccacaacct 12378584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 13440278 - 13440354
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccaca 178  Q
    |||||||||||||||||| | ||||||  ||| ||||||||||||||||| ||| || ||||||||||| |||||||    
T  13440278 aacatcaagaagtaaagcccaacactcatctagcaactcctcctcccactaccataaactacgtctccacctccaca 13440354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 45992780 - 45992849
Alignment:
Q  81 tgaaacattcaaaaacaagagaacatcaagaagtaaagctctacactccactaacaactcctcctcccac 150  Q
    ||||||||| | || ||| | ||||||||| || ||||| |||||||||||||||| |||||||||||||    
T  45992780 tgaaacattaacaagcaaaaaaacatcaagcagaaaagccctacactccactaacatctcctcctcccac 45992849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 19728712 - 19728787
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccac 177  Q
    ||||||||| |||||  | ||||||||| |||| ||  |||||||||||  ||||||||| |||||||||||||||    
T  19728712 aacatcaagtagtaagaccctacactcctctaataaaacctcctcccacgcccacaacctccgtctccaactccac 19728787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 150
Target Start/End: Original strand, 25924314 - 25924343
Alignment:
Q  121 ctacactccactaacaactcctcctcccac 150  Q
    ||||||||||||||||||||||||||||||    
T  25924314 ctacactccactaacaactcctcctcccac 25924343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 9e-58; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 33630221 - 33630378
Alignment:
Q  1 tggtactgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaaaaacaaga 100  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||  ||||||||    
T  33630221 tggtcctgagaggttagcacattataagcaccactaacagtgtatccatctgacggagcaggaagtcaaacccatctatctgaaacattcggaaacaaga 33630320  T
Q  101 gaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaa 158  Q
    ||||||||| || |||||| ||||||||| |||||| |||||||||||||||||||||    
T  33630321 gaacatcaaaaaataaagccctacactccgctaacatctcctcctcccactgccacaa 33630378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 1683169 - 1683310
Alignment:
Q  6 ctgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaaaaacaagagaaca 105  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||  |||||||||||||||||  ||| || ||||||    
T  1683169 ctgagaggttagcacatgataagcaccactaatagtgtatccatttgacggagtaggaagccaaaccaatctatctgaaacattcggaaataatagaaca 1683268  T
Q  106 tcaagaagtaaagctctacactccactaacaactcctcctcc 147  Q
    |||||||||||||| ||||||||| |||||| |||| |||||    
T  1683269 tcaagaagtaaagccctacactccgctaacatctccacctcc 1683310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 178
Target Start/End: Original strand, 15674009 - 15674126
Alignment:
Q  61 ggaagccaaactcatctatctgaaacattcaaaaacaagagaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacc 160  Q
    |||||||| || || ||||||||||||||   |  ||||  |||||||||||||||||| || |||||  ||| ||||||||||||||||||||||||||    
T  15674009 ggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctgcactcatctagcaactcctcctcccactgccacaacc 15674108  T
Q  161 tacgtctccaactccaca 178  Q
    |||||||||| |||||||    
T  15674109 tacgtctccacctccaca 15674126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 23347423 - 23347306
Alignment:
Q  61 ggaagccaaactcatctatctgaaacattcaaaaacaagagaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacc 160  Q
    |||||||| || || ||||||||||||||   |  ||||  |||||||||||||||||| ||||||||  ||| ||||||||||||||||||||| ||||    
T  23347423 ggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacc 23347324  T
Q  161 tacgtctccaactccaca 178  Q
    |||||||||| |||||||    
T  23347323 tacgtctccacctccaca 23347306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 25318079 - 25318155
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccaca 178  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||| |||| |||||||    
T  25318079 aacatcaagaagtaaagccctacactcctctagcaactcctcctcccactgccataacctacgtatccacctccaca 25318155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 26205573 - 26205649
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccaca 178  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||| |||| |||||||    
T  26205573 aacatcaagaagtaaagccctacactcctctagcaactcctcctcccactgccataacctacgtatccacctccaca 26205649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 19255841 - 19255913
Alignment:
Q  78 atctgaaacattcaaaaacaagagaacatcaagaagtaaagctctacactccactaacaactcctcctcccac 150  Q
    |||||||||||| | || ||| | ||||||||| || ||||| |||||||||||||||| |||||||||||||    
T  19255841 atctgaaacattaacaagcaaaaaaacatcaagcagaaaagccctacactccactaacatctcctcctcccac 19255913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 33640119 - 33640191
Alignment:
Q  78 atctgaaacattcaaaaacaagagaacatcaagaagtaaagctctacactccactaacaactcctcctcccac 150  Q
    |||||||||||| | || ||| | ||||||||| || ||||| |||||||||||||||| |||||||||||||    
T  33640119 atctgaaacattaacaagcaaaaaaacatcaagcagaaaagccctacactccactaacatctcctcctcccac 33640191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 503447 - 503399
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccac 150  Q
    ||||||||| || ||||| |||||||||||||||| |||||||||||||    
T  503447 aacatcaagcagaaaagccctacactccactaacatctcctcctcccac 503399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 6 - 176
Target Start/End: Original strand, 7804 - 7974
Alignment:
Q  6 ctgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaaaaacaagagaaca 105  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||  |||||| ||||||    
T  7804 ctgagaggttagcacctgataagcaccacgaacagtgtatccatctaaaggagcaggaagccaaacccatgtatctgaaacattcggaaacaaaagaaca 7903  T
Q  106 tcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactcca 176  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||    
T  7904 tcaagaagtaaagccatacactccactaacatctcctcctcccactgccacaatctacgcctccacctcca 7974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 6 - 176
Target Start/End: Original strand, 45421648 - 45421818
Alignment:
Q  6 ctgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaaaaacaagagaaca 105  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||| | ||||||  ||||||||| ||| ||||||||||||||  |||||| ||||||    
T  45421648 ctgagaggttagcacctgataagcaccacgaacagtgtatccatctaaaggagcataaagccaaacccatgtatctgaaacattcggaaacaaaagaaca 45421747  T
Q  106 tcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactcca 176  Q
    |||||||| ||||| ||||||||| |||||| |||||||||||||||| |||| ||||| ||||| |||||    
T  45421748 tcaagaagaaaagccctacactccgctaacatctcctcctcccactgcgacaatctacgcctccacctcca 45421818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 178
Target Start/End: Original strand, 43627683 - 43627800
Alignment:
Q  61 ggaagccaaactcatctatctgaaacattcaaaaacaagagaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacc 160  Q
    |||||||| || || ||||||||||||||   |  ||||  |||||||||||||||||| ||||||||  ||| ||||||||||||||||||||| ||||    
T  43627683 ggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacc 43627782  T
Q  161 tacgtctccaactccaca 178  Q
    |||||||||| |||||||    
T  43627783 tacgtctccacctccaca 43627800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 33548097 - 33548173
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccaca 178  Q
    |||||||||||||||||| ||||||||  ||| ||||||||||||||||||||| |||||||||||||| |||||||    
T  33548097 aacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccaca 33548173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 178
Target Start/End: Complemental strand, 31085648 - 31085476
Alignment:
Q  6 ctgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaactcatctatctgaaacattcaaaaacaagagaaca 105  Q
    ||||||||||| || |  ||| ||||||| ||  ||||| ||| ||||||||   |||||||| || || ||||||||||||||   |  ||||  ||||    
T  31085648 ctgagaggttaacaaactatatgcaccacgaattgtgtagccacctgacggatttggaagccacacccagctatctgaaacattaggattcaaggaaaca 31085549  T
Q  106 tcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccaca 178  Q
    |||||||||||||| ||||||||  |||||| ||||||||||||||| |||||||| | |||||| |||||||    
T  31085548 tcaagaagtaaagccctacactctgctaacagctcctcctcccactgtcacaacctgcatctccacctccaca 31085476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 26894522 - 26894451
Alignment:
Q  107 caagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccaca 178  Q
    ||||||||||||| ||||||||  ||| ||||||||||||||||||||| |||||||||||||| |||||||    
T  26894522 caagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccaca 26894451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 26899961 - 26899890
Alignment:
Q  107 caagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccaca 178  Q
    ||||||||||||| ||||||||  ||| ||||||||||||||||||||| |||||||||||||| |||||||    
T  26899961 caagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccaca 26899890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 22052852 - 22052911
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacct 161  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| |||||    
T  22052852 aacatcaagaagtaaagccctacactcctctagcaactcctcctcccactgccataacct 22052911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 13550349 - 13550425
Alignment:
Q  102 aacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccaca 178  Q
    ||||||||||| |||||| || |||||| ||| ||| ||||| ||||||||||| |||||||||||||| |||||||    
T  13550349 aacatcaagaattaaagccctgcactcctctagcaagtcctcatcccactgccataacctacgtctccacctccaca 13550425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 36804138 - 36804196
Alignment:
Q  103 acatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacct 161  Q
    |||||||  |||||||| ||||||||| ||||||| ||||||||||||  |||||||||    
T  36804138 acatcaaatagtaaagccctacactcctctaacaagtcctcctcccacgcccacaacct 36804196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 150
Target Start/End: Original strand, 12525185 - 12525214
Alignment:
Q  121 ctacactccactaacaactcctcctcccac 150  Q
    ||||||||||||||||||||||||||||||    
T  12525185 ctacactccactaacaactcctcctcccac 12525214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 21517724 - 21517684
Alignment:
Q  121 ctacactccactaacaactcctcctcccactgccacaacct 161  Q
    |||||||| |||||||||||||||||||||  |||||||||    
T  21517724 ctacactctactaacaactcctcctcccacgcccacaacct 21517684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 134774 - 134687
Alignment:
Q  97 aagagaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccacataaccc 184  Q
    ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| |||||    
T  134774 aagagaacatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccc 134687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 312601 - 312514
Alignment:
Q  97 aagagaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccacataaccc 184  Q
    ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| |||||    
T  312601 aagagaacatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccc 312514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 328055 - 327968
Alignment:
Q  97 aagagaacatcaagaagtaaagctctacactccactaacaactcctcctcccactgccacaacctacgtctccaactccacataaccc 184  Q
    ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| |||||    
T  328055 aagagaacatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccc 327968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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