View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19425_low_5 (Length: 694)

Name: NF19425_low_5
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19425_low_5
NF19425_low_5
[»] chr7 (1 HSPs)
chr7 (18-683)||(30688384-30689051)


Alignment Details
Target: chr7 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 18 - 683
Target Start/End: Original strand, 30688384 - 30689051
Alignment:
Q  18 ctccaaagcaccgtcactatccttccttgcagctctataggccttcttagcttcctgctcaccttcactaccttctttccttaccatactattatacagc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30688384 ctccaaagcaccgtcactatccttccttgcagctctataggccttcttagcttcctgctcaccttcaccaccttctttccttaccatactattatacagc 30688483  T
Q  118 tccatctgcgcagttgtaggttagaactgattttgtatggagcaaaagttggg--catgatactcaggaggttaagaaaatatattactaggctgtgggc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  30688484 tccatctgcgcagttgtaggttagaactgattttgtatggagcaaaagctgggggcatgatactcaggaggttaagaaaatatattactaggctgtgggc 30688583  T
Q  216 tgggcttatcctcctacatagcagtatagttagcctactttatatgcgtagatacagatacaataagcccaatcagtcataatagacgctcttaaaaaac 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30688584 tgggcttatcctcctacatagcagtatagttagcctactttatatgtgtagatacagatacaataagcccaatcagtcataatagacgctcttaaaaaac 30688683  T
Q  316 tagaaactgacatttgagtttcaagactttgaatcactgtaacgtattctctacatccttagagacgtatcaattctacagtctacgtacctccttttta 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  30688684 tagaaactgacatttgagtttcaagactttgaatcactgtaacgtattctctacatccttagagacagatcaattctacagtctacgtacctccttttta 30688783  T
Q  416 acaagcctcagaaactcttcacgttctttgctcaccgactgaaaagtcataagacaaatcattgcgtccaatcatttaccaaaaaatattaatagttgga 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30688784 acaagcctcagaaactcttcacgttctttgctcaccgactgaaaagtcataagacaaatcattgcgtccaatcatttaccaaaaaatattaatagttgga 30688883  T
Q  516 aagagtgaaataagttttccttacagattttgatgctaaaacagctaatgcttggctgatctcacaaagttgctcatgtttttccaatgccgttgccttt 615  Q
    |||||| |||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30688884 aagagtaaaataagttttccttacagatgctgatgctaaaacaactaatgcttggctgatctcacaaagttgctcatgtttttccaatgcctttgccttt 30688983  T
Q  616 atctcttctcgtgtttgttcggtcgttggagcaacctcttttgtagccaaattcctttcgccacctat 683  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30688984 atctcttctcgtgtttgttcggtcgttggagccacctcttttgtagccaaattcctttcgccacctat 30689051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University