View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_50 (Length: 318)
Name: NF19425_low_50
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 31189436 - 31189724
Alignment:
| Q |
13 |
aatatataccaaatactagtaagataactagtcctccagcaacaacaatcacagcaatttcccaaacaggcatgctactgcctttttccaccggcggtgt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31189436 |
aatatataccaaatactagtaagataactagtcctccagcaacaacaatcacagcaatttcccaaacaggtatgctactgcctttttccaccggcggtgt |
31189535 |
T |
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| Q |
113 |
aaagtctgtttaattatgatataatataaaaggttgtcatatagaccatattagaggatgatggaataagaagaaccatgaagaactataactgaccagg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31189536 |
aaagtctgtttaattatgatataatataaaaggttgtcatatagaccatattagaggatgatggaataagaagaaccatgaagaactataactgaccagg |
31189635 |
T |
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| Q |
213 |
atcaatcgatatagccgatataagaggaccatgtactgaatcaaatgggataccggttgtccctttccccgcccaatgaaggcgaatct |
301 |
Q |
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| T |
31189636 |
atcaaccgatatagccgatataagaggaccatgtactgaatcaaatgggataccggttgtccctttccccgcccaatgaaggcgaatct |
31189724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 31197429 - 31197714
Alignment:
| Q |
13 |
aatatataccaaatactagtaagataactagtcctccagcaacaacaatcacagcaatttcccaaacaggcatgctactgcctttttccaccggcggtgt |
112 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| || ||||||||||||||||| |
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| T |
31197429 |
aatatattccaaatatcagtaagataactagtcctccagcaac---aatcacagcaattttccaaacaggcatgctacttcccttttccaccggcggtgt |
31197525 |
T |
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| Q |
113 |
aaagtctgtttaattatgatataatataaaaggttgtcatatagaccatattagaggatgatggaataagaagaaccatgaagaactataactgaccagg |
212 |
Q |
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| T |
31197526 |
aaagtctgtttaattatgataaaatataaaaggttgtcatatagaccatattagatgatgatggaataagaagaaccatgaagaactataactgaccagg |
31197625 |
T |
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| Q |
213 |
atcaatcgatatagccgatataagaggaccatgtactgaatcaaatgggataccggttgtccctttccccgcccaatgaaggcgaatct |
301 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31197626 |
atcaacagatatagccgatataagaggaccatgtactgaatcaaatgggataccggttgtccctttccccgcccaatgaaggcgaatct |
31197714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 31216041 - 31216326
Alignment:
| Q |
13 |
aatatataccaaatactagtaagataactagtcctccagcaacaacaatcacagcaatttcccaaacaggcatgctactgcctttttccaccggcggtgt |
112 |
Q |
| |
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||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| || ||||||||||||||||| |
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| T |
31216041 |
aatatattccaaatatcagtaagataactagtcctccagcaac---aatcacagcaattttccaaacaggcatgctacttcccttttccaccggcggtgt |
31216137 |
T |
|
| Q |
113 |
aaagtctgtttaattatgatataatataaaaggttgtcatatagaccatattagaggatgatggaataagaagaaccatgaagaactataactgaccagg |
212 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31216138 |
aaagtctgtttaattatgataaaatataaaaggttgtcatatagaccatattagatgatgatggaataagaagaaccatgaagaactataactgaccagg |
31216237 |
T |
|
| Q |
213 |
atcaatcgatatagccgatataagaggaccatgtactgaatcaaatgggataccggttgtccctttccccgcccaatgaaggcgaatct |
301 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31216238 |
atcaacagatatagccgatataagaggaccatgtactgaatcaaatgggataccggttgtccctttccccgcccaatgaaggcgaatct |
31216326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 31178162 - 31178450
Alignment:
| Q |
13 |
aatatataccaaatactagtaagataactagtcctccagcaacaacaatcacagcaatttcccaaacaggcatgctactgcctttttccaccggcggtgt |
112 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||| || |||| |||||| |||||||||||||||||||| |||||||| || ||||| |
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| T |
31178162 |
aatatatactgaataccagtaagataactagtcctccagcaacagcagtcacgacaattttccaaacaggcatgctactgcgcttttccactgggggtgt |
31178261 |
T |
|
| Q |
113 |
aaagtctgtttaattatgatataatataaaaggttgtcatatagaccatattagaggatgatggaataagaagaaccatgaagaactataactgaccagg |
212 |
Q |
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||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31178262 |
aaagtctgtttaattatgataaaatataaaagacttgcatatagaccatattagaggatgatggaataagaagaaccatgaagaactataactgaccagg |
31178361 |
T |
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| Q |
213 |
atcaatcgatatagccgatataagaggaccatgtactgaatcaaatgggataccggttgtccctttccccgcccaatgaaggcgaatct |
301 |
Q |
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||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31178362 |
atcaaccgatatggccgatataagaggaccatatactgaatcaaatgggataccggttgtccctttccccgcccaatgaaggcgaatct |
31178450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 31243356 - 31243638
Alignment:
| Q |
16 |
atataccaaatactagtaagataactagtcctccagcaacaacaatcacagcaatttcccaaacaggcatgctactgcctttttccaccggcggtgtaaa |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || ||||||||||| |||||||| |
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| T |
31243356 |
atataccaaatatcagtaagataactagtcctccagcaagaacaatcacagcaattttccaaacaggcatgctacttcccttttccaccgggggtgtaaa |
31243455 |
T |
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| Q |
116 |
gtctgtttaattatgatataatataaaaggttgtcatatagaccatattagaggatgatggaataagaagaaccatgaagaactataactgaccaggatc |
215 |
Q |
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|||||||||||||||||| |||||||||| || |||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
31243456 |
gtctgtttaattatgataaaatataaaagatttgcatataaaccatattagaggatgatggcat---aagaaccatgaagaactataactgaccaggatc |
31243552 |
T |
|
| Q |
216 |
aatcgatatagccgatataagaggaccatgtactgaatcaaatgggataccggttgtccctttccccgcccaatgaaggcgaatct |
301 |
Q |
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|| |||||||||||||||||||||||||| ||| || ||||||||||| | |||||||||||||| ||||||||||||||||||| |
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| T |
31243553 |
aaccgatatagccgatataagaggaccatataccgatccaaatgggatagcagttgtccctttcccagcccaatgaaggcgaatct |
31243638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 301
Target Start/End: Original strand, 31230921 - 31231044
Alignment:
| Q |
178 |
ataagaagaaccatgaagaactataactgaccaggatcaatcgatatagccgatataagaggaccatgtactgaatcaaatgggataccggttgtccctt |
277 |
Q |
| |
|
||||||||||| | ||| |||| ||| ||||||||||| ||||||||||||||||||||| |||| ||| || ||||||||||| | |||||||||| |
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| T |
31230921 |
ataagaagaactaaagagagctattactaaccaggatcaaccgatatagccgatataagagggccatataccgatccaaatgggatagcagttgtccctt |
31231020 |
T |
|
| Q |
278 |
tccccgcccaatgaaggcgaatct |
301 |
Q |
| |
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|||| ||||||||||||||||||| |
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| T |
31231021 |
tcccagcccaatgaaggcgaatct |
31231044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 21000791 - 21000722
Alignment:
| Q |
220 |
gatatagccgatataagaggaccatgtactgaatcaaatgggataccggttgtccctttccccgcccaat |
289 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| ||||||||||| ||||| |||||||| ||||||| |
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| T |
21000791 |
gatatagctgatataagaggaccatatactgatccaaatgggatagtagttgttcctttcccagcccaat |
21000722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 21010576 - 21010645
Alignment:
| Q |
220 |
gatatagccgatataagaggaccatgtactgaatcaaatgggataccggttgtccctttccccgcccaat |
289 |
Q |
| |
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|||||||| |||||||||||||||| |||||| ||||||||||| ||||| |||||||| ||||||| |
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| T |
21010576 |
gatatagctgatataagaggaccatatactgatccaaatgggatagtagttgttcctttcccagcccaat |
21010645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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